Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00370 ATGGAGAACAACGGCGGCGGGAACAGGGCGGAGGCTCTGCGGTGGTTGAGCATAGCGGAGAAGCTTCTAGCGGCGCGTGACTTTTATGGAACTAGGAGCTTTGCGATCCGGGCTAGAGAATCGGACCCGATTGTGTTGGAGGCGGCGGACAGGGTTATCGCTGTCGCCGATACGCTGTTAGCGGCGGAGGGACGGATCAACAATCAGTATGACTGGTATAGTATCTTGCAAATTTCGCAGCCGACTCAGAGCATTGAGCTAATCGCAACTCAGTATCGGCGACTGGCGCTTCTTCTTCACCCGGAGGCCAACAGAGTTGCTTTTGCGGATCACGCTTTCAGGCTTGTGTCTGATGCATGGTGTGTGCTTTCGAATCCCTTGAGAAAAGCCTTGTACGATAATGATTATCTTATGTGTAGCCCCGGAACCACTGAGTCGAGTCAAAAACCTAAGTCCCCGCCGCACCAGCCTCAATTTCCCCAGCCTGTTAGAACTAGTCCAAGGAAGGAGACTAGGATTACGGTAGAGGAGTCTCAGCAGCAGGAACAACCGCCGCCAACTCCACCGCCGGAACGTTCAGAGCCGTCACCGTCACCGCCACCGGCGCAGCCGCAACCACAACCTCCTCAGTCGTCTCCCCACCGGTCACAACATCAAGAGGATCCGCAGCAGCAGCAGCAGCAATTTGTAAAAGAAAACCCCAAATCCACGAACGTTAAAGTATCTGTAGCTGAAGAGAGGCCAAATGTCAGTGATCTTCCCGAGTCAACTCAGGAGACCACTCAGCAGCACATTGACTCCAATCGTCCTTCACGGGTGGCTGAATCTACTCGGCCGACTGAGTCGAGCATTCCGGGTTTCTGGACTGCTTGTCCTTACTGTTATAATCTCTATGAGTACCCTAAGGGCTACGAGGATTGTGTTCTTAGGTGCCAGAATTGTGCCAAGGCATTTCAAGCAGCGGTCATTCCGTCACCACCGGTGGCTGACAATGCTTCTACCTTTTGTTGCTGGGGGTTTTTCCCACTTGGGGTTTCTCCGAATGCTAGAGGGACAACGGGGTCTGCTGCCTGGTCGCCCTTTTCGGCTATATTCGCCTGTCCTTTGCCTGGCCAAGGGGGAACTAAATCGGGGAAATCTAGAAATGTTAAACCCGCCAAGAAATCTACACCAAGATTCTTTTGTGATGAGGATGATATTTATGTTGAGGTTTCAGAACCGAGTGACAGTTCTGATGAAGAATGGGGGAGAGTGAGTAATAAGAAGAAGAGGTCTAAGAGGGGTTTAGCTAGTAGAAATGATAAGAGATCACATTCTGAAAGCTTACAGAAAGGGAACCAAGGGAATGTGGGGAATGGAAATGCTGATGAAGTTGAGAACATGAATGGGTTGATGCGGTTTGGTTTGTCAAACTCCATAAAGGTTGAACCTAGTAAGAAGGCTGTGGCAACCGCAGGGGTCACCGGGAAGAAGCATAAAGGGAAAGGGCCAAAGGAGCTAGGAAAGTTGGATTTGAATGTCGAATTCAGCAACGAGGTGGAGGAGCCCGCCACGGGTGTAAGTGAAGGACATGGGGTGGATAATATTGAAGGAATTGGGTTCTTTGAGGGCCTTGATGAATTTTTGAATAGTCTGCCAATACTTAATGCTGTGGCCGATGATAAGGTCAAAGCTAGTTAG 1680 50.48 MENNGGGNRAEALRWLSIAEKLLAARDFYGTRSFAIRARESDPIVLEAADRVIAVADTLLAAEGRINNQYDWYSILQISQPTQSIELIATQYRRLALLLHPEANRVAFADHAFRLVSDAWCVLSNPLRKALYDNDYLMCSPGTTESSQKPKSPPHQPQFPQPVRTSPRKETRITVEESQQQEQPPPTPPPERSEPSPSPPPAQPQPQPPQSSPHRSQHQEDPQQQQQQFVKENPKSTNVKVSVAEERPNVSDLPESTQETTQQHIDSNRPSRVAESTRPTESSIPGFWTACPYCYNLYEYPKGYEDCVLRCQNCAKAFQAAVIPSPPVADNASTFCCWGFFPLGVSPNARGTTGSAAWSPFSAIFACPLPGQGGTKSGKSRNVKPAKKSTPRFFCDEDDIYVEVSEPSDSSDEEWGRVSNKKKRSKRGLASRNDKRSHSESLQKGNQGNVGNGNADEVENMNGLMRFGLSNSIKVEPSKKAVATAGVTGKKHKGKGPKELGKLDLNVEFSNEVEEPATGVSEGHGVDNIEGIGFFEGLDEFLNSLPILNAVADDKVKAS 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4327331 4329010 - Cp4.1LG04g07200.1 Cpe04g00370 467932

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00370 559 MobiDBLite consensus disorder prediction 142 282 - -
Cpe04g00370 559 MobiDBLite consensus disorder prediction 182 211 - -
Cpe04g00370 559 SUPERFAMILY Chaperone J-domain 65 134 IPR036869 -
Cpe04g00370 559 Pfam DnaJ domain 71 133 IPR001623 -
Cpe04g00370 559 MobiDBLite consensus disorder prediction 212 244 - -
Cpe04g00370 559 MobiDBLite consensus disorder prediction 405 458 - -
Cpe04g00370 559 MobiDBLite consensus disorder prediction 442 456 - -
Cpe04g00370 559 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 5 559 - -
Cpe04g00370 559 MobiDBLite consensus disorder prediction 251 282 - -
Cpe04g00370 559 CDD DnaJ 71 125 IPR001623 -
Cpe04g00370 559 ProSiteProfiles dnaJ domain profile. 71 136 IPR001623 -
Cpe04g00370 559 Gene3D DnaJ domain 67 136 IPR036869 -
Cpe04g00370 559 PANTHER BNAANNG15130D PROTEIN 5 559 - -
Cpe04g00370 559 SMART dnaj_3 70 128 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00370 - - - csv:101202983 842.417
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00370 Cpe15g00374 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00341 Cpe-Chr2:1837715 Cpe04g00370 Cpe-Chr4:4327331 1.44E-23 dispersed
Cpe04g00370 Cpe-Chr4:4327331 Cpe06g00454 Cpe-Chr6:2642771 3.64E-22 dispersed
Cpe15g00374 Cpe-Chr15:4988108 Cpe04g00370 Cpe-Chr4:4327331 2.22E-172 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g955 . . . . . . . Bma12g00378 Cmo19g00493 Cmo11g01464 . . . . . Cpe04g00370 Cpe15g00374 Bhi05g00935 . . . . . . . . . . . . . . . . . . . . Cme01g00203 . . Bda15g00491 . . . . . . . . Cma11g01667 Cma19g00476 Car11g01178 Car19g00351 . . . . . . . . . Cla09g01575 Cam09g1578 Cec09g1732 Cco09g1794 . . Cre09g1623 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008143 2 1 2 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 0 2 1 0 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00370 Cpe_Chr04 FPKM 40.977081 47.413235 24.150494 23.598644 19.930601 16.842621 16.023851 30.179398 29.57905 32.168354