Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00376 ATGGATACCAAAAGTGAATGTTGCTGTTGCAAGATCAAGAACAACCACACAAAACTCACTCCCTTCAAATGCAAATGCATCAAGTTCAAACCTTCTTCTTCTTCCTCCTCCGATGTCGGGGCACTGTACACGAGTCGGGATGATGAATCGGGGGCGGAGATGGACCTCCAGCCACCACCGTCCCCGATGAAAAGCCTCTCCTCCTCTGCGTCGGACGGGCGGGTGAGGAAGCGAGCTCTCCTATGTGGGGTGAGTTACAAGAATTGGAAGCATAGGCTACATGGGACCGTGAATGATGTGTTGAATATGCAAGATTTGTTGATCAACCATTTCTCATATCTCAAACAAAACATTCGTATTCTTACAGAAGACGAAGCAAATCCAGAGCGAATTCCGACGAAGAAGAACATTCAGAGCAGTCTAAAATGGCTAGTGGAGGATTGCTACGGAGGCGAAAGCCTGGTGTTCTATTTCTCCGGCCACGGATTGCGGCAGCCGGATTTCGCAATGGACGAACTCGACGGCTACGACGAGACCATATGCCCTGTCGATTTCTTGGAGGAAGGAATGATTAGCGACAACGAAATCAACGCCACAATCGTTTCGCCTCTCAGAAGCGGCGTCAATCTCCACGCCATTGTAGACGCTTGCCACAGCGGAACCATTCTGGATCTCGCCTATGTTTACGATCGCACCAGTGTGAGGTTTTTGGATGGTGGAAGGGATGAGTGGATCGATAATCGGCCGCCGTCGGGGGCGAGTAAGGCGACTAGCGGCGGATTGGCGATTTCTTTGAGTGCCTGTGGAGATGATCAGTTCGCTGCTGATACTTCCATATTAACCGGAAAGTCGATGAACGGAGCAATGACATTCATTTTAATCGACTTGATAAAGACTTGTGGGAACGTTACATATGGACATCTCTTGGATTGCATGCACAATGCTGTTGAGAAAGCCAACAAACGAGGCTGTATCGCCTTCACGTTCTTCCGAAGATTGTTTGGGTATAAGCAAATTCAGGAACCTCTACTGTCGTCGTCAGAGATGTTTGATGTGCACAAGAAAATATTTACATTGTAA 1080 48.24 MDTKSECCCCKIKNNHTKLTPFKCKCIKFKPSSSSSSDVGALYTSRDDESGAEMDLQPPPSPMKSLSSSASDGRVRKRALLCGVSYKNWKHRLHGTVNDVLNMQDLLINHFSYLKQNIRILTEDEANPERIPTKKNIQSSLKWLVEDCYGGESLVFYFSGHGLRQPDFAMDELDGYDETICPVDFLEEGMISDNEINATIVSPLRSGVNLHAIVDACHSGTILDLAYVYDRTSVRFLDGGRDEWIDNRPPSGASKATSGGLAISLSACGDDQFAADTSILTGKSMNGAMTFILIDLIKTCGNVTYGHLLDCMHNAVEKANKRGCIAFTFFRRLFGYKQIQEPLLSSSEMFDVHKKIFTL 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4416690 4419787 + Cp4.1LG04g07140.1 Cpe04g00376 467938

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00376 359 Gene3D - 26 359 - -
Cpe04g00376 359 SUPERFAMILY Caspase-like 81 220 IPR029030 -
Cpe04g00376 359 PANTHER ICE-LIKE PROTEASE (CASPASE) P20 DOMAIN PROTEIN 45 359 - -
Cpe04g00376 359 PANTHER METACASPASE-4 45 359 - -
Cpe04g00376 359 MobiDBLite consensus disorder prediction 31 72 - -
Cpe04g00376 359 Pfam Caspase domain 76 351 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00376 K22684 MCA1; metacaspase-1 [EC:3.4.22.-] - csv:101220178 503.056
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00376 Cpe14g00192 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00376 Cpe-Chr4:4416690 Cpe08g00426 Cpe-Chr8:2719290 2.01E-85 dispersed
Cpe15g00224 Cpe-Chr15:2042896 Cpe04g00376 Cpe-Chr4:4416690 1.71E-36 transposed
Cpe15g00223 Cpe-Chr15:2040390 Cpe04g00376 Cpe-Chr4:4416690 3.67E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1005 . . . . . . . . . Cmo11g01481 . . . . . Cpe04g00376 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo16g00251 . . Car11g01184 . Cpe14g00192 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007266 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 0 2 5 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00376 Cpe_Chr04 FPKM 323.05072 338.133911 331.989319 339.278381 380.843292 407.020294 372.60144 428.981201 450.250092 413.495239