Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00378 ATGGCGGACCGTGGATCTTACGGCCTGGCTCCTCGTCTAGACATCGATCAGTTATTGATAGAAGCAAGACATCGTTGGCTGCGTCCAGCTGAAATTTGTGAAATACTTCGTAACTATCCGAAGTTTCATATTGCTTCAGAGCCTCCAGAGAGACCATCAAGTGGGTCACTTTTTCTTTTTGATCGAAAGGTTCTGAGGTACTTCCGAAAGGATGGACACAAATGGAGGAAGAAGAAAGATGGCAAAACTGTAAAGGAAGCTCATGAGAAGCTGAAGGTTGGAAGCATTGATGTACTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAAAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAGTAAAGGGTAATAGAACCAATATTGGAGCTGTTGTTGAGACAGATGAGGTTTCATCGAGTTCACAGAAGAGCAGTCCTATGAGTTCTAGCTATTCCAGCAGTCGTAATCAAGCAGCTTTTGAAAATGCAGATTCCCCCAGCCCAACCAGCACTGTGACATCGTCATATGAAGATGCTGATACTGAAGACACTTACCAAGAAACTTCAAGATTTCACTCATTTTCAACATCACCACTAGTGAACAATGGTCTTCTGGTGAATAAAAAAGAAGCTGGTGCATCAAATCTTTACTTTCCACATTCCTCTTCCAATAATGTTGAAGCTTGGCCATCGGCTCCTGCCGTGGAATATGTACCACAAGTTCAGAAAGATGGACTTAGTAGTGATGGTGGTACAGGTGTGATTGGTTCTCAGAAGACACTCACCTCTGCCTCGTGGGAAGAGATTTTTCAACAATGCACAACTGGATTTCAAACAGTACCTTCTCAGGTTTTAAACTCTTGGATTGAACCTTTATCTTCTGGAACTGTCCTTGGACAGGAGAATTCAATTCCTGGCAAGCTTTTAGCCGGTAATAGTGCTATTAAAGAGGACTTTAAGAGCTCACTGACAATGGCATCGACCTGTCAGGTTCCTTTTGAAGACAATACTTCATCCTTTTCAAAAGGGCACGTTGACCAGTTTCCAGATTTATATTCAGTTTATGATATCAATGGCAAGTTAACTGAGCAGAAATCTCATAATGCAACTTTTGGAAGTGGTCATGCTCATCCTAGCATAGAGAATAAGGAGCTTTTTTCAAAAAACTTCGAACCACAGTTCAATGAAGGAGAATTGTATTCTGCAACAAGGTTGAATTCTGAAAATGATATATCTAAAGAAGGTTCCATCAGCTATTCTTTGGCTTTGAAACAATCATTAGTAGATGGAGAGGAGAGTTTGAAGAAAGTCGACAGTTTCTCACGGTGGGTATCTAGAGAGCTTGTGGAAGTTGATGATTTGCACATGCATCCATCATCTGGCTTGTCTTGGAGCACTGTAGAATGTGGTGATATGGTGGATGATTCGTCATTAAGCCCTTCTCTTTCTGAAGACCAGCTTTTCAGTATAACAGACTTTTCTCCGAAGTCGACACTTCTAGATTTAGAAACCGAGGTTGTGATTATAGGAAAGTTTCTGGGGAACAATCATGCCACAAAATGTTACTGGTCATGTATGTTTGGGGAAGTTGAGGTTCCTGCAGAGGTTTTGGCTGATGGGATTCTGTGCTGTCACGCACCACCACATAGTGTTGGGCAAGTCCCTTTTTATGTTACATGTTCCAACAGATTAGCTTGTAGCGAGGTGCGTGAATTTGATTACTTGGCAGACTCTGCTCACGATGTAGATGTTACCGATGTATATACCGCTGGTGCTACAGAAGAATTACATATGCATTTGCGGTTTGAGAGGTTACTATCCACTAGATCTTCAGATCCTCCAAATAATCTCTCAGAAGGTGCCTTGGAGAAACGGAACTTGATCAAAAAGCTCATCTCAATAAAAGAAGAAGAAGATTGTTATGGGGAAGAGCCAAATTCTCAGAATGATCAAAATCAGCATCAAAGCAAGGAATCTCTTTTTATAAAGCTGATGAAAGAAAAGCTGTACTCATGGCTTATACGTAAAGTAATTGAAGATGGAAAAGGTCCTAATATATTGGATGATAAGGGACAGGGATTAATTCATTTAGCTGCAGCTCTTGGCTATGATTGGGCAATCAGACCAATTGTAGCTACTGGAGTGAGTCTGAATTTTAGAGACGTTAATGGATGGACTGCTCTTCATTGGGCAGCATTCTATGGCAGGCAAGAACTTGGAACTCTTATAACTTTGGGCGCCGATCCTGGATTGCCGTCAGATCCATCTCCAGGCAATCCTTCGGGCACAACGCCTGCAGACCTTGCTTCTGTAAGGGGACAGAAGGGGATCGCTGGTTTTCTAGCGGAGTCGTCATTGACCAGCTACATCTCATCTGTATCAATGGCAGATACCAAAAAAGATGGTGTGCTAGACGCTTCAGAAGGGAAAGCTGTGTATACCGCTGCTGAACGGAAGGCAACACCAATAAATGATGGTTTTATGCCTGGTGATTTGTCCTTGAAGGATTCGTTGACTGCTGTCTGCAATGCTACTCAAGCTGCTGATCGTATACATCTGATGTTTCGAGTAAAGTCATTTCAGAGGAAGCAATTATCAGAGCGTGGACCTGATGAATTTGGATACTCAGATGATAGTGCTATTTCGTTTGTCGCTGCCAGGGCACGCAAGTCTCGACTAAGTAACAGCCCAGACCATGCTGCTGCAGTTCACATACAGAAAAAGTTCCGTGGTTGGAAAATGAGAAAAGAATTCTTGCTAATACGTCAAAGAATAGTGAAAATTCAGGCCATTGTGAGAGGACACCAGGTGAGGAAGCAATACAAAAAGATTGTCTGGTCGGTAGGAATATTAGACAAGATTATTTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGAGGCTTCCGATCAGATACAGTTGCCAAGACTCCGCCCTCTGTGGTGATGGAACCACGTGAAGAGGACGACGAAGATTTTTTGAAGAAAGGAAGAAGACAGACTGAGGAAAGATTTCAAAAAGCACTTACTAGAGTCAAGTCCATGGCTCAATATCCTGAGGGACGGGACCAATACCGTAGGCTACTTACCGTGGTTCAAAAGTGCCGAGAAACCAAGGTGAGTAATATAAGTATTACTAGTACTTCAGAAGAGATAATAGAAGGTGATGACATGATTGATATCGACTCACTGCTGGATGATGATGCTTTGATGTCTATGACATTTGATTGA 3270 42.35 MADRGSYGLAPRLDIDQLLIEARHRWLRPAEICEILRNYPKFHIASEPPERPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNIGAVVETDEVSSSSQKSSPMSSSYSSSRNQAAFENADSPSPTSTVTSSYEDADTEDTYQETSRFHSFSTSPLVNNGLLVNKKEAGASNLYFPHSSSNNVEAWPSAPAVEYVPQVQKDGLSSDGGTGVIGSQKTLTSASWEEIFQQCTTGFQTVPSQVLNSWIEPLSSGTVLGQENSIPGKLLAGNSAIKEDFKSSLTMASTCQVPFEDNTSSFSKGHVDQFPDLYSVYDINGKLTEQKSHNATFGSGHAHPSIENKELFSKNFEPQFNEGELYSATRLNSENDISKEGSISYSLALKQSLVDGEESLKKVDSFSRWVSRELVEVDDLHMHPSSGLSWSTVECGDMVDDSSLSPSLSEDQLFSITDFSPKSTLLDLETEVVIIGKFLGNNHATKCYWSCMFGEVEVPAEVLADGILCCHAPPHSVGQVPFYVTCSNRLACSEVREFDYLADSAHDVDVTDVYTAGATEELHMHLRFERLLSTRSSDPPNNLSEGALEKRNLIKKLISIKEEEDCYGEEPNSQNDQNQHQSKESLFIKLMKEKLYSWLIRKVIEDGKGPNILDDKGQGLIHLAAALGYDWAIRPIVATGVSLNFRDVNGWTALHWAAFYGRQELGTLITLGADPGLPSDPSPGNPSGTTPADLASVRGQKGIAGFLAESSLTSYISSVSMADTKKDGVLDASEGKAVYTAAERKATPINDGFMPGDLSLKDSLTAVCNATQAADRIHLMFRVKSFQRKQLSERGPDEFGYSDDSAISFVAARARKSRLSNSPDHAAAVHIQKKFRGWKMRKEFLLIRQRIVKIQAIVRGHQVRKQYKKIVWSVGILDKIILRWRRKGSGLRGFRSDTVAKTPPSVVMEPREEDDEDFLKKGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKVSNISITSTSEEIIEGDDMIDIDSLLDDDALMSMTFD 1089
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4432433 4445257 - Cp4.1LG04g07050.1 Cpe04g00378 467940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00378 1089 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Cpe04g00378 1089 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 1089 - -
Cpe04g00378 1089 Gene3D - 662 833 IPR036770 -
Cpe04g00378 1089 Pfam IPT/TIG domain 503 581 IPR002909 -
Cpe04g00378 1089 Pfam IQ calmodulin-binding motif 913 932 IPR000048 GO:0005515
Cpe04g00378 1089 Pfam IQ calmodulin-binding motif 937 956 IPR000048 GO:0005515
Cpe04g00378 1089 SMART CG_1_2 18 136 IPR005559 GO:0003677
Cpe04g00378 1089 Gene3D - 912 959 - -
Cpe04g00378 1089 SUPERFAMILY E set domains 504 588 IPR014756 -
Cpe04g00378 1089 MobiDBLite consensus disorder prediction 147 193 - -
Cpe04g00378 1089 CDD IPT 503 589 - -
Cpe04g00378 1089 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Cpe04g00378 1089 SUPERFAMILY Ankyrin repeat 688 797 IPR036770 -
Cpe04g00378 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 901 962 IPR027417 -
Cpe04g00378 1089 SMART iq_5 934 956 IPR000048 GO:0005515
Cpe04g00378 1089 SMART iq_5 911 933 IPR000048 GO:0005515
Cpe04g00378 1089 Gene3D Immunoglobulins 497 593 IPR013783 -
Cpe04g00378 1089 MobiDBLite consensus disorder prediction 147 206 - -
Cpe04g00378 1089 MobiDBLite consensus disorder prediction 761 782 - -
Cpe04g00378 1089 ProSiteProfiles IQ motif profile. 912 941 IPR000048 GO:0005515
Cpe04g00378 1089 ProSiteProfiles IQ motif profile. 935 959 IPR000048 GO:0005515
Cpe04g00378 1089 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1089 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01309 Cpe-Chr3:10599106 Cpe04g00378 Cpe-Chr4:4432433 4.72E-61 dispersed
Cpe04g00378 Cpe-Chr4:4432433 Cpe14g00612 Cpe-Chr14:3876868 1.84E-67 dispersed
Cpe15g00228 Cpe-Chr15:2067654 Cpe04g00378 Cpe-Chr4:4432433 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49336 PF03859 CG-1 4.80E-50 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00378 K21596 - csv:101203707 1686.39