Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00378 ATGGCGGACCGTGGATCTTACGGCCTGGCTCCTCGTCTAGACATCGATCAGTTATTGATAGAAGCAAGACATCGTTGGCTGCGTCCAGCTGAAATTTGTGAAATACTTCGTAACTATCCGAAGTTTCATATTGCTTCAGAGCCTCCAGAGAGACCATCAAGTGGGTCACTTTTTCTTTTTGATCGAAAGGTTCTGAGGTACTTCCGAAAGGATGGACACAAATGGAGGAAGAAGAAAGATGGCAAAACTGTAAAGGAAGCTCATGAGAAGCTGAAGGTTGGAAGCATTGATGTACTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAAAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAGTAAAGGGTAATAGAACCAATATTGGAGCTGTTGTTGAGACAGATGAGGTTTCATCGAGTTCACAGAAGAGCAGTCCTATGAGTTCTAGCTATTCCAGCAGTCGTAATCAAGCAGCTTTTGAAAATGCAGATTCCCCCAGCCCAACCAGCACTGTGACATCGTCATATGAAGATGCTGATACTGAAGACACTTACCAAGAAACTTCAAGATTTCACTCATTTTCAACATCACCACTAGTGAACAATGGTCTTCTGGTGAATAAAAAAGAAGCTGGTGCATCAAATCTTTACTTTCCACATTCCTCTTCCAATAATGTTGAAGCTTGGCCATCGGCTCCTGCCGTGGAATATGTACCACAAGTTCAGAAAGATGGACTTAGTAGTGATGGTGGTACAGGTGTGATTGGTTCTCAGAAGACACTCACCTCTGCCTCGTGGGAAGAGATTTTTCAACAATGCACAACTGGATTTCAAACAGTACCTTCTCAGGTTTTAAACTCTTGGATTGAACCTTTATCTTCTGGAACTGTCCTTGGACAGGAGAATTCAATTCCTGGCAAGCTTTTAGCCGGTAATAGTGCTATTAAAGAGGACTTTAAGAGCTCACTGACAATGGCATCGACCTGTCAGGTTCCTTTTGAAGACAATACTTCATCCTTTTCAAAAGGGCACGTTGACCAGTTTCCAGATTTATATTCAGTTTATGATATCAATGGCAAGTTAACTGAGCAGAAATCTCATAATGCAACTTTTGGAAGTGGTCATGCTCATCCTAGCATAGAGAATAAGGAGCTTTTTTCAAAAAACTTCGAACCACAGTTCAATGAAGGAGAATTGTATTCTGCAACAAGGTTGAATTCTGAAAATGATATATCTAAAGAAGGTTCCATCAGCTATTCTTTGGCTTTGAAACAATCATTAGTAGATGGAGAGGAGAGTTTGAAGAAAGTCGACAGTTTCTCACGGTGGGTATCTAGAGAGCTTGTGGAAGTTGATGATTTGCACATGCATCCATCATCTGGCTTGTCTTGGAGCACTGTAGAATGTGGTGATATGGTGGATGATTCGTCATTAAGCCCTTCTCTTTCTGAAGACCAGCTTTTCAGTATAACAGACTTTTCTCCGAAGTCGACACTTCTAGATTTAGAAACCGAGGTTGTGATTATAGGAAAGTTTCTGGGGAACAATCATGCCACAAAATGTTACTGGTCATGTATGTTTGGGGAAGTTGAGGTTCCTGCAGAGGTTTTGGCTGATGGGATTCTGTGCTGTCACGCACCACCACATAGTGTTGGGCAAGTCCCTTTTTATGTTACATGTTCCAACAGATTAGCTTGTAGCGAGGTGCGTGAATTTGATTACTTGGCAGACTCTGCTCACGATGTAGATGTTACCGATGTATATACCGCTGGTGCTACAGAAGAATTACATATGCATTTGCGGTTTGAGAGGTTACTATCCACTAGATCTTCAGATCCTCCAAATAATCTCTCAGAAGGTGCCTTGGAGAAACGGAACTTGATCAAAAAGCTCATCTCAATAAAAGAAGAAGAAGATTGTTATGGGGAAGAGCCAAATTCTCAGAATGATCAAAATCAGCATCAAAGCAAGGAATCTCTTTTTATAAAGCTGATGAAAGAAAAGCTGTACTCATGGCTTATACGTAAAGTAATTGAAGATGGAAAAGGTCCTAATATATTGGATGATAAGGGACAGGGATTAATTCATTTAGCTGCAGCTCTTGGCTATGATTGGGCAATCAGACCAATTGTAGCTACTGGAGTGAGTCTGAATTTTAGAGACGTTAATGGATGGACTGCTCTTCATTGGGCAGCATTCTATGGCAGGCAAGAACTTGGAACTCTTATAACTTTGGGCGCCGATCCTGGATTGCCGTCAGATCCATCTCCAGGCAATCCTTCGGGCACAACGCCTGCAGACCTTGCTTCTGTAAGGGGACAGAAGGGGATCGCTGGTTTTCTAGCGGAGTCGTCATTGACCAGCTACATCTCATCTGTATCAATGGCAGATACCAAAAAAGATGGTGTGCTAGACGCTTCAGAAGGGAAAGCTGTGTATACCGCTGCTGAACGGAAGGCAACACCAATAAATGATGGTTTTATGCCTGGTGATTTGTCCTTGAAGGATTCGTTGACTGCTGTCTGCAATGCTACTCAAGCTGCTGATCGTATACATCTGATGTTTCGAGTAAAGTCATTTCAGAGGAAGCAATTATCAGAGCGTGGACCTGATGAATTTGGATACTCAGATGATAGTGCTATTTCGTTTGTCGCTGCCAGGGCACGCAAGTCTCGACTAAGTAACAGCCCAGACCATGCTGCTGCAGTTCACATACAGAAAAAGTTCCGTGGTTGGAAAATGAGAAAAGAATTCTTGCTAATACGTCAAAGAATAGTGAAAATTCAGGCCATTGTGAGAGGACACCAGGTGAGGAAGCAATACAAAAAGATTGTCTGGTCGGTAGGAATATTAGACAAGATTATTTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGAGGCTTCCGATCAGATACAGTTGCCAAGACTCCGCCCTCTGTGGTGATGGAACCACGTGAAGAGGACGACGAAGATTTTTTGAAGAAAGGAAGAAGACAGACTGAGGAAAGATTTCAAAAAGCACTTACTAGAGTCAAGTCCATGGCTCAATATCCTGAGGGACGGGACCAATACCGTAGGCTACTTACCGTGGTTCAAAAGTGCCGAGAAACCAAGGTGAGTAATATAAGTATTACTAGTACTTCAGAAGAGATAATAGAAGGTGATGACATGATTGATATCGACTCACTGCTGGATGATGATGCTTTGATGTCTATGACATTTGATTGA 3270 42.35 MADRGSYGLAPRLDIDQLLIEARHRWLRPAEICEILRNYPKFHIASEPPERPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNIGAVVETDEVSSSSQKSSPMSSSYSSSRNQAAFENADSPSPTSTVTSSYEDADTEDTYQETSRFHSFSTSPLVNNGLLVNKKEAGASNLYFPHSSSNNVEAWPSAPAVEYVPQVQKDGLSSDGGTGVIGSQKTLTSASWEEIFQQCTTGFQTVPSQVLNSWIEPLSSGTVLGQENSIPGKLLAGNSAIKEDFKSSLTMASTCQVPFEDNTSSFSKGHVDQFPDLYSVYDINGKLTEQKSHNATFGSGHAHPSIENKELFSKNFEPQFNEGELYSATRLNSENDISKEGSISYSLALKQSLVDGEESLKKVDSFSRWVSRELVEVDDLHMHPSSGLSWSTVECGDMVDDSSLSPSLSEDQLFSITDFSPKSTLLDLETEVVIIGKFLGNNHATKCYWSCMFGEVEVPAEVLADGILCCHAPPHSVGQVPFYVTCSNRLACSEVREFDYLADSAHDVDVTDVYTAGATEELHMHLRFERLLSTRSSDPPNNLSEGALEKRNLIKKLISIKEEEDCYGEEPNSQNDQNQHQSKESLFIKLMKEKLYSWLIRKVIEDGKGPNILDDKGQGLIHLAAALGYDWAIRPIVATGVSLNFRDVNGWTALHWAAFYGRQELGTLITLGADPGLPSDPSPGNPSGTTPADLASVRGQKGIAGFLAESSLTSYISSVSMADTKKDGVLDASEGKAVYTAAERKATPINDGFMPGDLSLKDSLTAVCNATQAADRIHLMFRVKSFQRKQLSERGPDEFGYSDDSAISFVAARARKSRLSNSPDHAAAVHIQKKFRGWKMRKEFLLIRQRIVKIQAIVRGHQVRKQYKKIVWSVGILDKIILRWRRKGSGLRGFRSDTVAKTPPSVVMEPREEDDEDFLKKGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKVSNISITSTSEEIIEGDDMIDIDSLLDDDALMSMTFD 1089
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4432433 4445257 - Cp4.1LG04g07050.1 Cpe04g00378 467940

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00378 1089 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Cpe04g00378 1089 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 1089 - -
Cpe04g00378 1089 Gene3D - 662 833 IPR036770 -
Cpe04g00378 1089 Pfam IPT/TIG domain 503 581 IPR002909 -
Cpe04g00378 1089 Pfam IQ calmodulin-binding motif 913 932 IPR000048 GO:0005515
Cpe04g00378 1089 Pfam IQ calmodulin-binding motif 937 956 IPR000048 GO:0005515
Cpe04g00378 1089 SMART CG_1_2 18 136 IPR005559 GO:0003677
Cpe04g00378 1089 Gene3D - 912 959 - -
Cpe04g00378 1089 SUPERFAMILY E set domains 504 588 IPR014756 -
Cpe04g00378 1089 MobiDBLite consensus disorder prediction 147 193 - -
Cpe04g00378 1089 CDD IPT 503 589 - -
Cpe04g00378 1089 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Cpe04g00378 1089 SUPERFAMILY Ankyrin repeat 688 797 IPR036770 -
Cpe04g00378 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 901 962 IPR027417 -
Cpe04g00378 1089 SMART iq_5 934 956 IPR000048 GO:0005515
Cpe04g00378 1089 SMART iq_5 911 933 IPR000048 GO:0005515
Cpe04g00378 1089 Gene3D Immunoglobulins 497 593 IPR013783 -
Cpe04g00378 1089 MobiDBLite consensus disorder prediction 147 206 - -
Cpe04g00378 1089 MobiDBLite consensus disorder prediction 761 782 - -
Cpe04g00378 1089 ProSiteProfiles IQ motif profile. 912 941 IPR000048 GO:0005515
Cpe04g00378 1089 ProSiteProfiles IQ motif profile. 935 959 IPR000048 GO:0005515
Cpe04g00378 1089 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1089 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00378 K21596 CAMTA; calmodulin-binding transcription activator - csv:101203707 1686.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01309 Cpe-Chr3:10599106 Cpe04g00378 Cpe-Chr4:4432433 4.72E-61 dispersed
Cpe04g00378 Cpe-Chr4:4432433 Cpe14g00612 Cpe-Chr14:3876868 1.84E-67 dispersed
Cpe15g00228 Cpe-Chr15:2067654 Cpe04g00378 Cpe-Chr4:4432433 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe04g00378 . 1 1089 CAMTA Transcription Factor Family AT5G64220 52.8 2.7e-269 925.6
Cpe15g00228 . 2 1066 CAMTA Transcription Factor Family AT5G64220 51.9 6.7e-260 894.4
Cpe01g00967 . 6 935 CAMTA Transcription Factor Family AT1G67310 51.0 6.8e-249 857.8
Cpe17g00057 CST 34 921 CAMTA Transcription Factor Family AT3G16940 54.1 1.9e-254 875.9
Cpe12g00311 CST 34 900 CAMTA Transcription Factor Family AT3G16940 53.7 1.1e-252 870.2
Cpe12g00311 CST 11 624 CAMTA Transcription Factor Family AT4G16150 52.6 7.6e-191 664.8
Cpe17g00057 CST 11 645 CAMTA Transcription Factor Family AT4G16150 51.6 1.3e-185 647.5
Cpe04g00378 . 1 1089 CAMTA Transcription Factor Family AT5G64220 52.8 2.7e-269 925.6
Cpe15g00228 . 2 1066 CAMTA Transcription Factor Family AT5G64220 51.9 6.7e-260 894.4
Cpe01g00967 . 6 935 CAMTA Transcription Factor Family AT1G67310 51.0 6.8e-249 857.8
Cpe12g00311 CST 11 624 CAMTA Transcription Factor Family AT4G16150 52.6 7.6e-191 664.8
Cpe17g00057 CST 11 645 CAMTA Transcription Factor Family AT4G16150 51.6 1.3e-185 647.5
Cpe17g00057 CST 34 921 CAMTA Transcription Factor Family AT3G16940 54.1 1.9e-254 875.9
Cpe12g00311 CST 34 900 CAMTA Transcription Factor Family AT3G16940 53.7 1.1e-252 870.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006263 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 0 4 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49336 PF03859 CG-1 4.80E-50 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00378 Cpe_Chr04 FPKM 93.702454 96.715134 39.45985 40.891716 78.341415 75.28334 77.594597 64.661919 68.392845 59.52261