Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00400 ATGGCTGATGGTGAAGATATCCAACCTCTTGTCTGTGATAATGGAACTGGAATGGTCAAGGCTGGTTTTGCCGGTGACGATGCTCCAAGGGCTGTGTTTCCTAGTATTGTCGGTCGACCACGTCATACCGGTGTGATGGTTGGAATGGGCCAAAAGGATGCATATGTTGGGGATGAAGCTCAGTCAAAAAGGGGTATTCTTACATTGAAATACCCAATTGAGCATGGCATTGTAAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACGTTCTACAACGAGCTTCGTGTTGCTCCTGAAGAACATCCGGTCCTTCTTACTGAAGCACCGCTCAACCCGAAGGCAAACAGGGAGAAGATGACTCAGATCATGTTTGAAACGTTCGACGTCCCTGCTATGTATGTTGCAATCCAGGCCGTTTTATCTCTCTATGCCAGTGGTCGGACAACAGGTATTGTGTTGGATTCTGGTGATGGAGTGAGCCACACAGTGCCAATATATGAGGGGTTTTCGCTCCCTCATGCAATCCTACGTCTCGACCTTGCTGGTCGTGATCTGACTGATGCTTTAATGAAAATTCTCACCGAAAGAGGTTACATGTTCACGACAACCGCCGAGCGGGAAATTGTCCGTGATGTGAAGGAGAAGCTTGCATATGTGGCCCTTGATTATGAGCAAGAACTGGAGACAGCCAAGACTAGTTCGGCCATTGAGAAAAGCTACGAACTACCAGACGGGCAGGTAATTACAATCGGAGCTGAGAGATTCCGTTGCCCTGAAGTACTTTTCCAGCCATCTCTGATCGGCATGGAATCTCCTGGAATCCATGAAACCACGTATAACTCCATCATGAAGTGTGATGTCGATATCAGGAAAGACTTGTATGGTAACATCGTCCTCAGTGGTGGGTCAACGATGTTCCCCGGCATTGCTGATCGTATGAGCAAAGAAATTACCGCTCTTGCTCCGAGCAGCATGAAGATTAAGGTCGTTGCTCCTCCAGAAAGGAAGTACAGTGTTTGGATTGGAGGATCCATCCTAGCATCCCTCAGTACCTTCCAACAGATGTGGATAACAAAGGCCGAATACGACGAGTCGGGTCCCGCTATCGTTCACAGGAAATGCTTCTGA 1134 47.88 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFDVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDVKEKLAYVALDYEQELETAKTSSAIEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKAEYDESGPAIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4643168 4646417 - Cp4.1LG04g06840.1 Cpe04g00400 467962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00400 377 Gene3D - 140 340 - -
Cpe04g00400 377 PANTHER ACTIN-2-LIKE 1 376 - -
Cpe04g00400 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cpe04g00400 377 PANTHER ACTIN 1 376 IPR004000 -
Cpe04g00400 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cpe04g00400 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cpe04g00400 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cpe04g00400 377 Pfam Actin 5 377 IPR004000 -
Cpe04g00400 377 Gene3D - 10 371 - -
Cpe04g00400 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cpe04g00400 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cpe04g00400 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cpe04g00400 377 PRINTS Actin signature 28 37 IPR004000 -
Cpe04g00400 377 PRINTS Actin signature 51 62 IPR004000 -
Cpe04g00400 377 PRINTS Actin signature 63 85 IPR004000 -
Cpe04g00400 377 PRINTS Actin signature 117 130 IPR004000 -
Cpe04g00400 377 PRINTS Actin signature 142 161 IPR004000 -
Cpe04g00400 377 PRINTS Actin signature 238 254 IPR004000 -
Cpe04g00400 377 SMART actin_3 7 377 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00400 Cpe-Chr4:4643168 Cpe19g00544 Cpe-Chr19:4606352 0 dispersed
Cpe05g01072 Cpe-Chr5:7096182 Cpe04g00400 Cpe-Chr4:4643168 6.36E-137 dispersed
Cpe18g00750 Cpe-Chr18:7247328 Cpe04g00400 Cpe-Chr4:4643168 1.09E-70 dispersed
Cpe15g00255 Cpe-Chr15:2430022 Cpe04g00400 Cpe-Chr4:4643168 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00400 K10355 - csv:101214459 753.051