Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00402 GCACAACATTGGAACTGCAAATTGGAGAACTGCGAGCGTCCCCTTCCACCATTCTCCTTCTCTCCGCCACTCTCTCTCCGCCACTTGTCCTCCGCCATCGCTCTCACTCCTCGACACGGTTTCTGCTCTGCTACTGATGAGCTTTGCCGGAGTACTTGTTTGAAAGTCAGAGCCATGGATCAATCAGAGCGTTCTCAGCATCAGCAACAATCCCAGCAGGCTGCAGGCGGTGTTGGTGCAGGACAATTACCATATTCTAATCCTTACCAAACAGCTCCAATGGGGGCGTCCGGAACGCCTGCTATTACGATTCCCCCGACTCAGCAACCATCCAGTTTCTCCAACTCTCCACACCAGCTTGCCTTTCAGCAGGCTCAGCACTTCCACCAGCAGCAGCAGCAACAACAGCAACAACAGCTCCAAGTGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTCAAGAACCACAGTCTCCCCCTTGCTCGAATCAAGAAAATAATGAAAGCGGATGAAGACGTTCGAATGATTTCAGCTGAAGCACCAGTTATATTTGCAAAGGCGTGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAACGATATTGCAGCTGCAATATCGAGGACCGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGATGAACTGAAAGAGGAAGGTCTCGGAATCACGAAAGCTTCTATTCCTGTAGTTGGTTCCCCGGCCGATCTTCCTTATTACTATGTTCCATCACAACATCCAGTGAGTGCTACAGGGATGATCATGGGGAAGCAATTAGATCAAGCGAACATGTACAGTGCCACAGCTCAACAGCCCCGACCACCGATACCTTTCATGCCGTGGCCGCATACTCAAGCTCAGCAGCAGCAGCAACAACAAACTCAGCAGCAAAGTAACAGAACAGAAATA 987 48.33 AQHWNCKLENCERPLPPFSFSPPLSLRHLSSAIALTPRHGFCSATDELCRSTCLKVRAMDQSERSQHQQQSQQAAGGVGAGQLPYSNPYQTAPMGASGTPAITIPPTQQPSSFSNSPHQLAFQQAQHFHQQQQQQQQQQLQVFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASIPVVGSPADLPYYYVPSQHPVSATGMIMGKQLDQANMYSATAQQPRPPIPFMPWPHTQAQQQQQQQTQQQSNRTEI 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4668502 4671501 - Cp4.1LG04g06850.1 Cpe04g00402 467964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00402 329 MobiDBLite consensus disorder prediction 84 131 - -
Cpe04g00402 329 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 67 316 - -
Cpe04g00402 329 MobiDBLite consensus disorder prediction 63 77 - -
Cpe04g00402 329 Gene3D Histone, subunit A 122 239 IPR009072 GO:0046982
Cpe04g00402 329 MobiDBLite consensus disorder prediction 60 131 - -
Cpe04g00402 329 MobiDBLite consensus disorder prediction 295 329 - -
Cpe04g00402 329 Pfam Core histone H2A/H2B/H3/H4 109 224 IPR007125 GO:0003677
Cpe04g00402 329 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 67 316 - -
Cpe04g00402 329 MobiDBLite consensus disorder prediction 308 329 - -
Cpe04g00402 329 SUPERFAMILY Histone-fold 125 233 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00402 Cpe-Chr4:4668502 Cpe04g00147 Cpe-Chr4:1422317 8.93E-82 dispersed
Cpe15g00258 Cpe-Chr15:2468536 Cpe04g00402 Cpe-Chr4:4668502 3.15E-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49338 PF00125 Histone 1.50E-17 CL0012 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00402 K08066 - csv:101213813 414.846