Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00403 ATGATCCCCCAAGCTCCTATTCAGCAACCAAGTTCGTTTTTTCTTTTCCTTTCTGGGCATCGAGAGCCCATTTCCTCCTCCTCCAAGCTCTCGATCCGACCCCCCACATTTCCCCAATTCCCATTTCAAATGGATAACATCACGGCGCAATTAAAGCGCGGAATCTCCCGCCAATTCTCCACTGGCTCTCTCCGCCGTAGTCTCAGCCGCCAATTCTCCCGACAATCCTCTTTAGACCCTCGTCGGAATAATCTAAGATTCAGCTTCGGCCGCCAATCCTCTCTCGACCCTATTCGCCGTTCTCCTGGTGAAGACAATGACCTCTCTGTTCCTGAAAATTTGGACTCCACTATGCAGCTGCTCTTCATGGCTTGTCGTGGCGATGTCCGTGGCGTGCAGGATTTGCTTAATGATGGCACCGATGTTAATAGCATTGATTTGGATGGCCGCACTGCCTTGCATATTGCTGCTTGTGAGGGCCATGCTGAGGTTGTTAAGTTCTTGCTTACCCGTAAGGCTAATATTGATGCTCGTGATCGTTGGGGGAGTACGGCAGCTGCTGATGCTAAATATTATGGGAATATCGAGGGGTCATATCAAGTTGCCAAATGGAATGGTACAAAAGTGGCTGTGAAAATTCTTGATAAGGATTGTTATTTTAATCCGGATTCTATAAATGCATTCAAACACGAGTTGACGTTACTCGAAAGGGTTCGACATCCGAACGTAGTTCAGTTTGTCGGGGCCGTTACGCAGAATTTGCCGATGATGATCGTTTCGGAATACCATCCAATGGGTGATTTAGGTTTCTATCTTCAAAAGAAAGGTCGTTTATCTCCGTCTAAAGCCTTACGATTCGCCCTCGATATCGCTAGGCACGTTCGGGGAATGAACTATCTTCACGAATGCAAACCGGAGCCTATTATCCACTGCGATTTAAAGCCAAAAAATATTTTGCTGGATAATGGAGGACAACTCAAAGTTGCTGGATTTGGCATGATAAGATTGTCAAAAATGTCTCCTGATAAAGCAAAACTAGCTCATCAAATGGTTACCGATTCTTTGAACTTGTACTTAGCTCCCGAGATTTACAACGACGAAGTATTTGACAGAAGTGTCGATGCGTTTTCGTTTGGTCTCATTTTGTACGAGATGGTTGAAGGTATGCAGCCATTCCATCCTAGGCCTCTGGAAGAGGCGTCGAAAGCTATGTGTGTCGAACGAAAGAGACCTCCGTTTAAGATCAAATCGAAAAGTTATCCACCTGATCTAAAAGAATTGATAGAGGAATGCTGGGCTCCAGAACCTGTTGTGAGGCCTACTTTCTCTGAAATTATTGTAAGGTTAGATAAAATAGTCACCAACTGCTCGAAACATGGATGGTGGAAAGACACGTTTAAACTTCCCTGGTACGTTCTTTTCACTCTAAAACTATTCTCGTTTGATAACGTTTTCGTTTCTCTCTTTTGGTTCATGAATCTACCGGATTCAAAAACGTTCATAAAAAACACGAACGGAGTGTTGTTCATAAACAAAAGACGAGAAACGGGACGGGACTCGAGCTCAAGTTTATAA 1575 44.38 MIPQAPIQQPSSFFLFLSGHREPISSSSKLSIRPPTFPQFPFQMDNITAQLKRGISRQFSTGSLRRSLSRQFSRQSSLDPRRNNLRFSFGRQSSLDPIRRSPGEDNDLSVPENLDSTMQLLFMACRGDVRGVQDLLNDGTDVNSIDLDGRTALHIAACEGHAEVVKFLLTRKANIDARDRWGSTAAADAKYYGNIEGSYQVAKWNGTKVAVKILDKDCYFNPDSINAFKHELTLLERVRHPNVVQFVGAVTQNLPMMIVSEYHPMGDLGFYLQKKGRLSPSKALRFALDIARHVRGMNYLHECKPEPIIHCDLKPKNILLDNGGQLKVAGFGMIRLSKMSPDKAKLAHQMVTDSLNLYLAPEIYNDEVFDRSVDAFSFGLILYEMVEGMQPFHPRPLEEASKAMCVERKRPPFKIKSKSYPPDLKELIEECWAPEPVVRPTFSEIIVRLDKIVTNCSKHGWWKDTFKLPWYVLFTLKLFSFDNVFVSLFWFMNLPDSKTFIKNTNGVLFINKRRETGRDSSSSL 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4678275 4684863 + Cp4.1LG04g06790.1 Cpe04g00403 467965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00403 524 Gene3D - 111 191 IPR036770 -
Cpe04g00403 524 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 75 196 - -
Cpe04g00403 524 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 196 469 - -
Cpe04g00403 524 SUPERFAMILY Protein kinase-like (PK-like) 203 493 IPR011009 -
Cpe04g00403 524 Pfam Protein tyrosine and serine/threonine kinase 197 448 IPR001245 GO:0004672|GO:0006468
Cpe04g00403 524 SMART ANK_2a 148 177 IPR002110 GO:0005515
Cpe04g00403 524 SMART ANK_2a 116 144 IPR002110 GO:0005515
Cpe04g00403 524 ProSiteProfiles Ankyrin repeat profile. 148 180 IPR002110 GO:0005515
Cpe04g00403 524 CDD STKc_MAP3K-like 196 449 - -
Cpe04g00403 524 Gene3D Transferase(Phosphotransferase) domain 1 264 465 - -
Cpe04g00403 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 308 320 IPR008271 GO:0004672|GO:0006468
Cpe04g00403 524 Pfam Ankyrin repeats (3 copies) 119 179 IPR002110 GO:0005515
Cpe04g00403 524 SMART serkin_6 192 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g00403 524 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 75 196 - -
Cpe04g00403 524 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 196 469 - -
Cpe04g00403 524 Gene3D Phosphorylase Kinase; domain 1 194 263 - -
Cpe04g00403 524 PIRSF ILK 51 196 - -
Cpe04g00403 524 PIRSF ILK 194 470 - -
Cpe04g00403 524 ProSiteProfiles Protein kinase domain profile. 181 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g00403 524 SUPERFAMILY Ankyrin repeat 119 196 IPR036770 -
Cpe04g00403 524 ProSiteProfiles Ankyrin repeat region circular profile. 148 180 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00403 Cpe-Chr4:4678275 Cpe05g01543 Cpe-Chr5:10606822 3.53E-110 dispersed
Cpe15g00261 Cpe-Chr15:2505055 Cpe04g00403 Cpe-Chr4:4678275 3.90E-31 transposed
Cpe15g00260 Cpe-Chr15:2500904 Cpe04g00403 Cpe-Chr4:4678275 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62335 PF07714 PK_Tyr_Ser-Thr 8.20E-46 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00403 - - cpep:111792150 1019.99