Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00449 ATGTCCATCCTGCCTTCACAAATCCAGGGTTCCACTTCAACATCTTCTTCGTCTTCAGCTTCCTCTCTAAACCCTAATTCCCACCATGGAACCGACCCCCTCTTCTCTCAATCCACTCTCTCTCCCACGCATTCCTGTCCATCCCTACGGATTTCCGATCCCCATTCGTCTCTCGGGGATTCCTGCAACGTATCAGGCCTGTCGATTCAACCTGCAGATGATGCTGAATCTTCCAAGAAGGTTAGTAAATTAGAGAATCTGAATGATTTGAAGATGCCAGCTCATCAAAACACTGTAACCCATTTGCAGAGCCAATCTGGTGTAGAAGATGGTGGATCAGTCCTTCCCGGGAGTAAAATATCGTCTTCTATAATTTCTTCTCATGATCAGCAAAGCGCCAGGTCTGCAAACTCTCATGCCAACAATAAACGCTCAGCTGGAAGAAAAGCCCAAATGACAAATGGAAACCATTTGCTCAATTTTCAATATGATCCCATTTCTCGTCCTCGTCCTCGAGCCAGAGCTCCTCCTCCAAGAAGGCCGCATAAGATAAAGCCATACAACAAGGATCTATTTCTCCAGGCTAATTACAAATTTGTGGTTTTAGATACAGGTTATCATACGCCTGAATATTTGGATCCTGATAAAATGCTGCGTTGGGAGGATATCATATGTGTAAGATATTCTACACCATCATTGGTTCAATGTCCTATTTGTCTGGAGCATCCACACTGTCCTCAAATTACCTCATGTGGACATATTTATTGTTTCCCGTGCATTTTGAGGTACCTGTTAATGGGCAAGGAGGATCAGAAAGGTGACTGCTGGAAAAAATGCCCTTTGTGTTTTGTGATGCTGTCTCTGAAGGATTTATTCACCGTCCACATTGAGCTTTTGAAGCAATATTCTGTTGGTGATACTATAGAATTTATGCTTTTAACTCGGCAAAAAGATTCATTTGCCTTATCATTCAAGGATAAACAAGAGGATGGTATCAGGTCAAGTGATAACGATGAAATCTATGATTCTTTTTCGAAGTTTATATTTACATCTGACGTGGATCTCTCAGTGCGGCAAGCAATATCTGATTTAGATGCCTGGTTAGCAAAAGCAGAAACAGGACAAGTAGATGACCTCGAAAAGCTTCCATATGTTTGTGCTGCTTTGGAACAACTGGAGCAGAGGAAGAAGGATTGGAATGAACTTCAGGCCTGTTTTAAGCAGAACGACTGTCAGATAAGATCTCAAACGCTCCTTCCAACTGGTAATGTTAGCAATGCTGGGCCTGGAGCATGCAGTTCTAGACACGAGGCTTCTTCCATTGATATTAATGATGATTGCAAGTTTCTAGGAAATGTAGTGCAAGATAAGTTGGATTATTCTACTCATGTGGGTCAGACTGAGGCTGTTGATGAACTTTTAGAACTCCAACAAAACTCAAATGAAACTAGAGATGCAAAGGACAAGGACTCGTACAATTTTTACCAGGCTACCGATGGCCAGCATATCATTCTCCATCCATTAAACATGAAGTGTCTTTTACAATATTATGGGAGTTATGGCAGACTGCCACTCAGAATAAGTGGAAAGATTTTAGAATTTGAAACAGTCACCCAAACCGAGGCCACAAGAAGGCGGTATCGTTACTTGAGTCATTTTTCCTTAACAACATCGTTTCAGCTGTGTGAAATTGATTTGACCAACCTGTTGCCTTCGTCCTCCATGATTCCCTTCATGGATGAGATAAAGAAGCGTGAGAAGCAGAGGAAACAACTTGCAAAAAAGATGCAAAGGGAGAAGATCAAAGCAGAATCTGCTTCAACGTGTTCTTTGTCAATGATGGCCGGATCAGGAAGTTCATATCGTTATGATACTCCAAACCTTTCCCTGGATGACTTTGAAGCTTTAGGAAGTTCTCCTGTGACATCATCGAGCCCTCCTGTTGGCGGGAGGCAACTGTTCTCGAGCGTTACAAGACTTGGTTTCGCTGCTGCACATGATTCTCCATCCTTGAGAATTGAAGAAACTGATTCTCTGCACATTAATGAAGTGAAAAGTGATTCATCCGGTGCAAATGAGATACACAATGCAACTCCATCGTTTGCAAATATAATATCGAGAGCGAAGTCTGGAGGAAGTACAGAATCTCCTAAGGCAAATGAAGTGGGAAAGAAGGGGAAGAAACCAAGTCGAGTTTTGTTATCCACAGCGGGCGGTCGGCGCTATTGA 2229 42.53 MSILPSQIQGSTSTSSSSSASSLNPNSHHGTDPLFSQSTLSPTHSCPSLRISDPHSSLGDSCNVSGLSIQPADDAESSKKVSKLENLNDLKMPAHQNTVTHLQSQSGVEDGGSVLPGSKISSSIISSHDQQSARSANSHANNKRSAGRKAQMTNGNHLLNFQYDPISRPRPRARAPPPRRPHKIKPYNKDLFLQANYKFVVLDTGYHTPEYLDPDKMLRWEDIICVRYSTPSLVQCPICLEHPHCPQITSCGHIYCFPCILRYLLMGKEDQKGDCWKKCPLCFVMLSLKDLFTVHIELLKQYSVGDTIEFMLLTRQKDSFALSFKDKQEDGIRSSDNDEIYDSFSKFIFTSDVDLSVRQAISDLDAWLAKAETGQVDDLEKLPYVCAALEQLEQRKKDWNELQACFKQNDCQIRSQTLLPTGNVSNAGPGACSSRHEASSIDINDDCKFLGNVVQDKLDYSTHVGQTEAVDELLELQQNSNETRDAKDKDSYNFYQATDGQHIILHPLNMKCLLQYYGSYGRLPLRISGKILEFETVTQTEATRRRYRYLSHFSLTTSFQLCEIDLTNLLPSSSMIPFMDEIKKREKQRKQLAKKMQREKIKAESASTCSLSMMAGSGSSYRYDTPNLSLDDFEALGSSPVTSSSPPVGGRQLFSSVTRLGFAAAHDSPSLRIEETDSLHINEVKSDSSGANEIHNATPSFANIISRAKSGGSTESPKANEVGKKGKKPSRVLLSTAGGRRY 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5240411 5246022 + Cp4.1LG04g06370.1 Cpe04g00449 468011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00449 742 SMART ring_2 236 282 IPR001841 -
Cpe04g00449 742 MobiDBLite consensus disorder prediction 99 161 - -
Cpe04g00449 742 SUPERFAMILY RING/U-box 231 295 - -
Cpe04g00449 742 MobiDBLite consensus disorder prediction 1 62 - -
Cpe04g00449 742 PANTHER RING FINGER 10 FAMILY MEMBER 129 738 IPR039739 -
Cpe04g00449 742 CDD RING-HC_RNF10 236 283 - -
Cpe04g00449 742 MobiDBLite consensus disorder prediction 707 742 - -
Cpe04g00449 742 Coils Coil 389 409 - -
Cpe04g00449 742 Coils Coil 579 602 - -
Cpe04g00449 742 ProSiteProfiles Zinc finger RING-type profile. 236 282 IPR001841 -
Cpe04g00449 742 ProSitePatterns Zinc finger RING-type signature. 251 260 IPR017907 -
Cpe04g00449 742 Pfam Zinc finger, C3HC4 type (RING finger) 236 282 IPR018957 GO:0046872
Cpe04g00449 742 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 319 IPR013083 -
Cpe04g00449 742 MobiDBLite consensus disorder prediction 99 185 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00449 Cpe-Chr4:5240411 Cpe19g00574 Cpe-Chr19:4819902 4.51E-06 dispersed
Cpe04g00449 Cpe-Chr4:5240411 Cpe03g00364 Cpe-Chr3:1952877 5.78E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00449 - - csv:101203987 1195.26