Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00453 ATGCTTCCCAAATCCACCGGAATCCTTTGGCTCGACGGCGACCATGACGACGCCGCTTCCTGGACCAGAGCCACTGACGACCACTACGACGATATCGCCATTGCCGGCTCCATTTCTTCCTTCAAATCCATGCTCGAACCTGACTGTTTCATTAACTCTTCTTCTGCTCCTCTCAACTCCTCTCTCCATCGTTTCAATCCCACTGATAACTTCCTCTCTTCCTGCTCTCCCTCCCAACCTTTTGCTCTCGATCCTTCCCAGTCTATGTTGCCTTCTCACAAATCCTGTTTCTCTTCTCTTCTTAATGTTGTTTGCGGCAGTAATTTCGATAATGCCTATGATTTTGGCGGCGATACTGCTTTGTTTGGATCTTACCAGGGGAATCAAGCTTCCAATCCCTCTGTTTTCATGGGATTCACTGGCGTTTCTCCTCTTCCTCAAATCGGTAATCAGTCGCTTAGCTTAAATCATTCTGAGTTTCCGGTTGCTGATAACCCTCCCGCTTTCGGCGATGGATTTAATCCGGCGGCTGCGTTTGAGAGCTTCGATGGCTGCGGGAATGCTCTGTTTCAGAATAGGCCTAAGGTTTTGAGACCTCTTGAAGTGCTCCCGCAAGTCGGTGCTCAGCCGACGCTGTTTCAGAAGCGAGCGGCGCACCGAGTTGTCTCTCCCGGAGCTGATAAACTTGAGAATCTGGAGGTTTCGGGTTTGAAATTTGGAGAAGGCTCAACGTGGACGGCGGATTTGGAGAATCTGAATAAGAACAACGGCGATGAGGACGGTGAGGATGGTAGCGTGGATGTTTCTCGGTTTAATTACGACTCCGATGAAGGCAATGAGTATAACAAGCAAGAGGACAATGTTAATGCTAAAAACTGCGGAAGCAATTCCAATGCCAACAGCACTGTAACCGGCGGCGACCAGAAAGGGAAGAAGAAGGGGATGCCGGCGAAGAATCTCATGGCGGAGCGACGGCGGAGAAAGAAGCTGAATGATAGACTTTACATGCTTAGGTCCGTCGTACCCAAAATAAGCAAGATGGATAGAGCTTCAATCCTTGGAGACGCCATAGACTACTTGAAGGAGCTTCTTCAAAGGATAAATGATCTCCATAATGAACTTGAATCGACTCCTTCTGGTTCTTTGCTGCAACCTTCTGCAAGCTTTCACCCTTTGACGCCAACGCTGCCAACGCTTCCCTGTCGTGTCAAGGAGGAGCTGTGTCCAAGCTCCTTGTGCAGCCCCAAAAATCAGCCTGCCAGGGTCGAAGTCCGGGTCAGAGAAGGCAGAGCTGTCAATATTCACATGTTTTGTTCTTGCAAGCCCGGTCTCTTGCTATCCACCATGAGGGCTCTGGATAGCCTCGGCTTGGATATCCAACAAGCTGTAATCAGCTGTTTCAATGGATTTGCTTTGGACGTGTTTCGAGCTGAGCAATCCAAGGAAGGTCAGGAGATCATACCTGAGCAAATAAAAGCAGTGCTGTTGGAATCAGCTGGCTTACATGGTGTTATGTAG 1518 49.14 MLPKSTGILWLDGDHDDAASWTRATDDHYDDIAIAGSISSFKSMLEPDCFINSSSAPLNSSLHRFNPTDNFLSSCSPSQPFALDPSQSMLPSHKSCFSSLLNVVCGSNFDNAYDFGGDTALFGSYQGNQASNPSVFMGFTGVSPLPQIGNQSLSLNHSEFPVADNPPAFGDGFNPAAAFESFDGCGNALFQNRPKVLRPLEVLPQVGAQPTLFQKRAAHRVVSPGADKLENLEVSGLKFGEGSTWTADLENLNKNNGDEDGEDGSVDVSRFNYDSDEGNEYNKQEDNVNAKNCGSNSNANSTVTGGDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPSGSLLQPSASFHPLTPTLPTLPCRVKEELCPSSLCSPKNQPARVEVRVREGRAVNIHMFCSCKPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQSKEGQEIIPEQIKAVLLESAGLHGVM 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5257417 5260962 - Cp4.1LG04g06330.1 Cpe04g00453 468015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00453 505 Gene3D - 308 378 IPR036638 GO:0046983
Cpe04g00453 505 ProSiteProfiles ACT domain profile. 433 505 IPR002912 -
Cpe04g00453 505 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 314 363 IPR011598 GO:0046983
Cpe04g00453 505 PANTHER BHLH TRANSCRIPTIONAL FACTOR 74 505 - -
Cpe04g00453 505 Pfam Helix-loop-helix DNA-binding domain 321 363 IPR011598 GO:0046983
Cpe04g00453 505 MobiDBLite consensus disorder prediction 279 315 - -
Cpe04g00453 505 CDD bHLH_AtAMS_like 317 381 - -
Cpe04g00453 505 CDD ACT_UUR-ACR-like 441 494 - -
Cpe04g00453 505 MobiDBLite consensus disorder prediction 285 307 - -
Cpe04g00453 505 Coils Coil 357 377 - -
Cpe04g00453 505 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 74 505 - -
Cpe04g00453 505 SMART finulus 320 369 IPR011598 GO:0046983
Cpe04g00453 505 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 317 381 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00453 Cpe-Chr4:5257417 Cpe09g00942 Cpe-Chr9:8431363 1.81E-155 dispersed
Cpe15g00600 Cpe-Chr15:6735586 Cpe04g00453 Cpe-Chr4:5257417 2.31E-25 dispersed
Cpe18g00640 Cpe-Chr18:6587133 Cpe04g00453 Cpe-Chr4:5257417 1.05E-19 dispersed
Cpe03g00658 Cpe-Chr3:3925974 Cpe04g00453 Cpe-Chr4:5257417 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49341 PF00010 HLH 2.00E-09 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00453 - - bhj:120082707 771.155