Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe04g00477 | ATGGATCCTAAAACTTCATCATCAACAACAAAGCAGCCCCAAGAACTTGTACCAAACTTTTTGAACTTTCCACAAGAACACCAACAAGAACAATCAATCATGGGGGAAAACAAACCACCGGAAATCAAAGAAGAAGGTAAGAAACAATTAGCTCCAAAACGAAGCTCCAACAAAGACCGTCACACAAAAGTGGAAGGACGTGGTCGAAGAATCCGTATGCCGGCACTATGTGCGGCGAGGATTTTTCAATTAACGAGGGAATTGGGTCATAAATCCGACGGAGAAACCATCCAGTGGTTGCTACAGCAAGCGGAGCCATCGATAATCGCCGCCACTGGAACTGGAACGATCCCAGCTTCTGCTTTAGCAGCAGTGGCGGGTTCCGTTTCGCAACAAGGGGTTTCTCTCTCCGCCGGTTTACAACAAAAATTGGAGGAATTAGGCGGTGGCGGGTCCAGTAGGGCCAGTTGGGGGAATTTGGGGAGACCCCATTTGGCTGCTGCTGCTGCCGCCGCCGCCGCAGCCGCCACAGCCACAGCGGTTTGGCCCTCCTCTGTCAGTGGGTTTGGGTTTCAGTCATCAACTACAGCTGGTGTTGCTCAATCAGCCACTAATTTAGCTAATGAAACTTCAAATTACTTTCATAAACTTGGTTTCCCAGCCTTTGACTTACCCCCCACCAACATGGGTCCTATGAGTTTCACCTCCATTTTAGGTGCCAACACTCAACAGCTACCTGGTTTAGAGCTTGGATTGAGCCAAGATCCCCATATTGGGGCTATCAATCCACAAGCATTGAACCAGTTTTACCAACAAATGGGCCAAGCTAGAGTTCATCACCATCATCAACAACACCAGCAACCTCCTGCTAAAGATGATTCACAAGATTCAGGGTGTGATTATCTGCAACTTAGAGCAGCTTGGCTTGAGCTTAACTTCATTTTTCTGTTTGTTTCTCTATTCAAAAGGCGTGTTGATCATGTTGACATCCTTGTTGTCAAGCATGCAATGAATCTAGCATGCGTGGAAATTACAACTATGGGCGGGATTGAGCGTTCAGATCTAAAAGACATCTAA | 1077 | 46.98 | MDPKTSSSTTKQPQELVPNFLNFPQEHQQEQSIMGENKPPEIKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAVAGSVSQQGVSLSAGLQQKLEELGGGGSSRASWGNLGRPHLAAAAAAAAAAATATAVWPSSVSGFGFQSSTTAGVAQSATNLANETSNYFHKLGFPAFDLPPTNMGPMSFTSILGANTQQLPGLELGLSQDPHIGAINPQALNQFYQQMGQARVHHHHQQHQQPPAKDDSQDSGCDYLQLRAAWLELNFIFLFVSLFKRRVDHVDILVVKHAMNLACVEITTMGGIERSDLKDI | 358 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 5425087 | 5427456 | - | Cp4.1LG04g06060.1 | Cpe04g00477 | 468039 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe04g00477 | 358 | PANTHER | TRANSCRIPTION FACTOR TCP20-LIKE | 17 | 298 | - | - | |
Cpe04g00477 | 358 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Cpe04g00477 | 358 | Pfam | TCP family transcription factor | 56 | 146 | IPR017887 | - | |
Cpe04g00477 | 358 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 17 | 298 | IPR005333 | GO:0003700 | |
Cpe04g00477 | 358 | MobiDBLite | consensus disorder prediction | 1 | 69 | - | - | |
Cpe04g00477 | 358 | MobiDBLite | consensus disorder prediction | 277 | 296 | - | - | |
Cpe04g00477 | 358 | MobiDBLite | consensus disorder prediction | 37 | 69 | - | - | |
Cpe04g00477 | 358 | ProSiteProfiles | TCP domain profile. | 57 | 111 | IPR017887 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g01458 | Cpe-Chr1:8738376 | Cpe04g00477 | Cpe-Chr4:5425087 | 8.21E-31 | dispersed | |
Cpe04g00477 | Cpe-Chr4:5425087 | Cpe17g00923 | Cpe-Chr17:7142019 | 3.24E-69 | dispersed | |
Cpe03g00634 | Cpe-Chr3:3789407 | Cpe04g00477 | Cpe-Chr4:5425087 | 7.81E-08 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49344 | PF03634 | TCP | 1.00E-30 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe04g00477 | - | - | cmax:111486688 | 583.948 |