Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00477 ATGGATCCTAAAACTTCATCATCAACAACAAAGCAGCCCCAAGAACTTGTACCAAACTTTTTGAACTTTCCACAAGAACACCAACAAGAACAATCAATCATGGGGGAAAACAAACCACCGGAAATCAAAGAAGAAGGTAAGAAACAATTAGCTCCAAAACGAAGCTCCAACAAAGACCGTCACACAAAAGTGGAAGGACGTGGTCGAAGAATCCGTATGCCGGCACTATGTGCGGCGAGGATTTTTCAATTAACGAGGGAATTGGGTCATAAATCCGACGGAGAAACCATCCAGTGGTTGCTACAGCAAGCGGAGCCATCGATAATCGCCGCCACTGGAACTGGAACGATCCCAGCTTCTGCTTTAGCAGCAGTGGCGGGTTCCGTTTCGCAACAAGGGGTTTCTCTCTCCGCCGGTTTACAACAAAAATTGGAGGAATTAGGCGGTGGCGGGTCCAGTAGGGCCAGTTGGGGGAATTTGGGGAGACCCCATTTGGCTGCTGCTGCTGCCGCCGCCGCCGCAGCCGCCACAGCCACAGCGGTTTGGCCCTCCTCTGTCAGTGGGTTTGGGTTTCAGTCATCAACTACAGCTGGTGTTGCTCAATCAGCCACTAATTTAGCTAATGAAACTTCAAATTACTTTCATAAACTTGGTTTCCCAGCCTTTGACTTACCCCCCACCAACATGGGTCCTATGAGTTTCACCTCCATTTTAGGTGCCAACACTCAACAGCTACCTGGTTTAGAGCTTGGATTGAGCCAAGATCCCCATATTGGGGCTATCAATCCACAAGCATTGAACCAGTTTTACCAACAAATGGGCCAAGCTAGAGTTCATCACCATCATCAACAACACCAGCAACCTCCTGCTAAAGATGATTCACAAGATTCAGGGTGTGATTATCTGCAACTTAGAGCAGCTTGGCTTGAGCTTAACTTCATTTTTCTGTTTGTTTCTCTATTCAAAAGGCGTGTTGATCATGTTGACATCCTTGTTGTCAAGCATGCAATGAATCTAGCATGCGTGGAAATTACAACTATGGGCGGGATTGAGCGTTCAGATCTAAAAGACATCTAA 1077 46.98 MDPKTSSSTTKQPQELVPNFLNFPQEHQQEQSIMGENKPPEIKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAVAGSVSQQGVSLSAGLQQKLEELGGGGSSRASWGNLGRPHLAAAAAAAAAAATATAVWPSSVSGFGFQSSTTAGVAQSATNLANETSNYFHKLGFPAFDLPPTNMGPMSFTSILGANTQQLPGLELGLSQDPHIGAINPQALNQFYQQMGQARVHHHHQQHQQPPAKDDSQDSGCDYLQLRAAWLELNFIFLFVSLFKRRVDHVDILVVKHAMNLACVEITTMGGIERSDLKDI 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5425087 5427456 - Cp4.1LG04g06060.1 Cpe04g00477 468039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00477 358 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 17 298 - -
Cpe04g00477 358 MobiDBLite consensus disorder prediction 1 35 - -
Cpe04g00477 358 Pfam TCP family transcription factor 56 146 IPR017887 -
Cpe04g00477 358 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 298 IPR005333 GO:0003700
Cpe04g00477 358 MobiDBLite consensus disorder prediction 1 69 - -
Cpe04g00477 358 MobiDBLite consensus disorder prediction 277 296 - -
Cpe04g00477 358 MobiDBLite consensus disorder prediction 37 69 - -
Cpe04g00477 358 ProSiteProfiles TCP domain profile. 57 111 IPR017887 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01458 Cpe-Chr1:8738376 Cpe04g00477 Cpe-Chr4:5425087 8.21E-31 dispersed
Cpe04g00477 Cpe-Chr4:5425087 Cpe17g00923 Cpe-Chr17:7142019 3.24E-69 dispersed
Cpe03g00634 Cpe-Chr3:3789407 Cpe04g00477 Cpe-Chr4:5425087 7.81E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49344 PF03634 TCP 1.00E-30 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00477 - - cmax:111486688 583.948