Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00477 ATGGATCCTAAAACTTCATCATCAACAACAAAGCAGCCCCAAGAACTTGTACCAAACTTTTTGAACTTTCCACAAGAACACCAACAAGAACAATCAATCATGGGGGAAAACAAACCACCGGAAATCAAAGAAGAAGGTAAGAAACAATTAGCTCCAAAACGAAGCTCCAACAAAGACCGTCACACAAAAGTGGAAGGACGTGGTCGAAGAATCCGTATGCCGGCACTATGTGCGGCGAGGATTTTTCAATTAACGAGGGAATTGGGTCATAAATCCGACGGAGAAACCATCCAGTGGTTGCTACAGCAAGCGGAGCCATCGATAATCGCCGCCACTGGAACTGGAACGATCCCAGCTTCTGCTTTAGCAGCAGTGGCGGGTTCCGTTTCGCAACAAGGGGTTTCTCTCTCCGCCGGTTTACAACAAAAATTGGAGGAATTAGGCGGTGGCGGGTCCAGTAGGGCCAGTTGGGGGAATTTGGGGAGACCCCATTTGGCTGCTGCTGCTGCCGCCGCCGCCGCAGCCGCCACAGCCACAGCGGTTTGGCCCTCCTCTGTCAGTGGGTTTGGGTTTCAGTCATCAACTACAGCTGGTGTTGCTCAATCAGCCACTAATTTAGCTAATGAAACTTCAAATTACTTTCATAAACTTGGTTTCCCAGCCTTTGACTTACCCCCCACCAACATGGGTCCTATGAGTTTCACCTCCATTTTAGGTGCCAACACTCAACAGCTACCTGGTTTAGAGCTTGGATTGAGCCAAGATCCCCATATTGGGGCTATCAATCCACAAGCATTGAACCAGTTTTACCAACAAATGGGCCAAGCTAGAGTTCATCACCATCATCAACAACACCAGCAACCTCCTGCTAAAGATGATTCACAAGATTCAGGGTGTGATTATCTGCAACTTAGAGCAGCTTGGCTTGAGCTTAACTTCATTTTTCTGTTTGTTTCTCTATTCAAAAGGCGTGTTGATCATGTTGACATCCTTGTTGTCAAGCATGCAATGAATCTAGCATGCGTGGAAATTACAACTATGGGCGGGATTGAGCGTTCAGATCTAAAAGACATCTAA 1077 46.98 MDPKTSSSTTKQPQELVPNFLNFPQEHQQEQSIMGENKPPEIKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAVAGSVSQQGVSLSAGLQQKLEELGGGGSSRASWGNLGRPHLAAAAAAAAAAATATAVWPSSVSGFGFQSSTTAGVAQSATNLANETSNYFHKLGFPAFDLPPTNMGPMSFTSILGANTQQLPGLELGLSQDPHIGAINPQALNQFYQQMGQARVHHHHQQHQQPPAKDDSQDSGCDYLQLRAAWLELNFIFLFVSLFKRRVDHVDILVVKHAMNLACVEITTMGGIERSDLKDI 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5425087 5427456 - Cp4.1LG04g06060.1 Cpe04g00477 468039

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00477 358 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 17 298 - -
Cpe04g00477 358 MobiDBLite consensus disorder prediction 1 35 - -
Cpe04g00477 358 Pfam TCP family transcription factor 56 146 IPR017887 -
Cpe04g00477 358 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 298 IPR005333 GO:0003700
Cpe04g00477 358 MobiDBLite consensus disorder prediction 1 69 - -
Cpe04g00477 358 MobiDBLite consensus disorder prediction 277 296 - -
Cpe04g00477 358 MobiDBLite consensus disorder prediction 37 69 - -
Cpe04g00477 358 ProSiteProfiles TCP domain profile. 57 111 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00477 - - - cmax:111486688 583.948
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01458 Cpe-Chr1:8738376 Cpe04g00477 Cpe-Chr4:5425087 8.21E-31 dispersed
Cpe04g00477 Cpe-Chr4:5425087 Cpe17g00923 Cpe-Chr17:7142019 3.24E-69 dispersed
Cpe03g00634 Cpe-Chr3:3789407 Cpe04g00477 Cpe-Chr4:5425087 7.81E-08 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe01g01152 . 36 250 TCP Transcription Factor Family AT5G23280 62.7 3.3e-64 242.3
Cpe09g00495 . 33 230 TCP Transcription Factor Family AT5G23280 58.0 2.1e-58 223.0
Cpe20g00029 CCT,ECH 35 134 TCP Transcription Factor Family AT3G47620 83.0 2.5e-39 160.6
Cpe04g00477 . 33 276 TCP Transcription Factor Family AT3G27010 55.5 5.1e-54 208.8
Cpe01g01152 . 8 248 TCP Transcription Factor Family AT5G08330 55.2 9.6e-61 230.7
Cpe09g00495 . 10 228 TCP Transcription Factor Family AT5G08330 57.0 8.1e-60 227.6
Cpe13g00517 . 1 103 TCP Transcription Factor Family AT5G08330 82.7 3.0e-38 156.0
Cpe04g01456 CCT,CST 31 177 TCP Transcription Factor Family AT5G60970 56.1 2.0e-38 157.1
Cpe03g00977 . 53 164 TCP Transcription Factor Family AT3G02150 66.4 2.2e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003722 3 3 3 4 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 0 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49344 PF03634 TCP 1.00E-30 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00477 Cpe_Chr04 FPKM 3.163522 2.348641 0.0 0.823021 26.248283 16.819284 19.638432 2.177653 1.36089 0.0