Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00481 ATGGAGAATTATCAGATGTTTTTCCTCTGCTCCGGCGGCGAAGGGTTGTCGGCTTATCATCATCCCGACATGTCGTCCGAAAGTGGGTCCGATGTTTTTGGGAGTTTTCACGGTGGGAATCTGCAGGGAAATGGGTTTATGAAGATGGAGACGGCGGCGGTGGTGGAAGGCGACAGGAATAGCGGCGGCGATAGCTACCAGATCGGCGGCGGAAAAAAGAAAGGGGAGAAGAAGGTGAGGAAACCGAGATATGCTTTTGAGACAAAGAGCCAAGTTGACATTCTTGATGATGGATATCGTTGGAGGAAATATGGTCAAAAAGCTGTCAAAAACAACAAGTTTCCTAGGAGCTATTATAGGTGCACGCATCAAGGATGTAATGTGAAGAAACAAGTGCAAAGGTTAACAAGAGACGAAGGGGTAGTGGTGACAACATATGAAGGCATGCACACACACTCCATTGATAAGCCAACAGATAACTTCGAACAAATCTTGAGTAGAATGCAGATATACGGTACATCTTACTGA 528 46.02 MENYQMFFLCSGGEGLSAYHHPDMSSESGSDVFGSFHGGNLQGNGFMKMETAAVVEGDRNSGGDSYQIGGGKKKGEKKVRKPRYAFETKSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTRDEGVVVTTYEGMHTHSIDKPTDNFEQILSRMQIYGTSY 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5469872 5471862 + Cp4.1LG04g06070.1 Cpe04g00481 468043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00481 175 SUPERFAMILY WRKY DNA-binding domain 88 154 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe04g00481 175 ProSiteProfiles WRKY domain profile. 90 155 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe04g00481 175 SMART WRKY_cls 95 154 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe04g00481 175 Gene3D WRKY domain 80 155 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe04g00481 175 MobiDBLite consensus disorder prediction 58 80 - -
Cpe04g00481 175 Pfam WRKY DNA -binding domain 96 152 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe04g00481 175 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 57 171 IPR044810 GO:0003700
Cpe04g00481 175 PANTHER WRKY TRANSCRIPTION FACTOR 75-RELATED 57 171 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00649 Cpe-Chr1:3759854 Cpe04g00481 Cpe-Chr4:5469872 8.21E-37 dispersed
Cpe03g01223 Cpe-Chr3:9956281 Cpe04g00481 Cpe-Chr4:5469872 1.87E-54 dispersed
Cpe04g00481 Cpe-Chr4:5469872 Cpe12g00331 Cpe-Chr12:2190645 4.44E-38 dispersed
Cpe03g00631 Cpe-Chr3:3760638 Cpe04g00481 Cpe-Chr4:5469872 5.64E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49345 PF03106 WRKY 3.50E-26 CL0274 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00481 - - cmax:111486729 350.517