Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00482 ATGGATTGGGGTTGGAGAAAATTTTCTGGGGAAAGAGTCACTTTCCAGGAAAACAAACAGAATCCCACAAGTTTTTCTGACTCGATTGGATCAAATAATGAAGAAGAACCGATTCTCAAGGGTTCGAGTCAAGAAAGTTCTACCTCTCATGGATCCTCCAAGAGGACTCGATTGCTTCATGCGAGCCAGAACCAGACATGTTTGGTGGATGGCTGTGACTCTGACTTGAGCAATTGCAAGGAGTATCATCGTCGTCATAGGGTCTGCGATTTGCACTCCAAAACCCCTGTTGTGATGGTCAAAGGCGAGGAGAAACGATTCTGTCAACAGTGCAGCAGATTTCATTCGCTTGGTGAGTTTGATGAGGTTAAGAGAAGCTGTAGAAAGAGGCTTGATGGACACAATCGGCGTAGGAGGAAGCCTCAGCCTGAATCCTTGTTCATCAGTTCAAGGGATTTTCTGTCAAATTGCAAAGGTCCAATTGTGCTGCAATTCAGCGATCAACAAGTTCATGTTCCTGATGAACTTGGTAGGAGTTTATGGCCTATGAGAACTGAAGAAAACTCATCTTTGGTTCCATCAAATTCCTCTGGTTTCTTCAGTTTTGGAGGAGGAGACAACAAACAGCTGCCATTTTTGCAGCCTAAGAATGGCTCAAAGCAAGGAAAGCATATGGTTTCTTCTCAGTTTTGTTTCAATCAGCAACTTCCTGATGCAATCTCTCAGGTGAGTGAGGGGGACAGCCAGAAAACGGTGCCTCCGAATAACTCGCCCGAGGATTCGGGTTGTGCTCTCTATCTTCTGTCATCGCACCCTGTGCAAGCTCTCCCAGAGGCTGGCTTGAGCTCTTTGGTTCAGTCCCATCTGAGTCTTCCAGTCCAAACTCAAGAGGAGACTGAGCTGAATTTCAACAGCAAAGGGGCCTATTTTGCTGGTTGTTTTGTGACCTTTGACATAAAAAGGAATAGACTACTACTTTGA 981 45.36 MDWGWRKFSGERVTFQENKQNPTSFSDSIGSNNEEEPILKGSSQESSTSHGSSKRTRLLHASQNQTCLVDGCDSDLSNCKEYHRRHRVCDLHSKTPVVMVKGEEKRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFISSRDFLSNCKGPIVLQFSDQQVHVPDELGRSLWPMRTEENSSLVPSNSSGFFSFGGGDNKQLPFLQPKNGSKQGKHMVSSQFCFNQQLPDAISQVSEGDSQKTVPPNNSPEDSGCALYLLSSHPVQALPEAGLSSLVQSHLSLPVQTQEETELNFNSKGAYFAGCFVTFDIKRNRLLL 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5477767 5480250 + Cp4.1LG04g06010.1 Cpe04g00482 468044

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00482 326 Gene3D - 59 128 IPR036893 GO:0003677|GO:0005634
Cpe04g00482 326 Pfam SBP domain 67 140 IPR004333 GO:0003677
Cpe04g00482 326 MobiDBLite consensus disorder prediction 1 57 - -
Cpe04g00482 326 SUPERFAMILY SBT domain 66 146 IPR036893 GO:0003677|GO:0005634
Cpe04g00482 326 MobiDBLite consensus disorder prediction 14 57 - -
Cpe04g00482 326 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 43 304 - -
Cpe04g00482 326 ProSiteProfiles Zinc finger SBP-type profile. 64 141 IPR004333 GO:0003677
Cpe04g00482 326 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 43 304 IPR044817 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00482 - - - bhj:120070162 473.781
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00482 Cpe-Chr4:5477767 Cpe17g01068 Cpe-Chr17:8083301 4.96E-51 dispersed
Cpe18g00914 Cpe-Chr18:8150876 Cpe04g00482 Cpe-Chr4:5477767 4.41E-42 wgd
Cpe03g00630 Cpe-Chr3:3756159 Cpe04g00482 Cpe-Chr4:5477767 1.89E-156 wgd
Cpe04g00482 Cpe-Chr4:5477767 Cpe04g01623 Cpe-Chr4:12582134 2.17E-41 wgd
Cpe04g00482 Cpe-Chr4:5477767 Cpe09g00953 Cpe-Chr9:8542517 3.16E-44 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe03g00825 CCT 181 1002 SBP-box Gene Family AT2G47070 55.9 1.5e-240 829.7
Cpe02g01546 CCT 179 1038 SBP-box Gene Family AT2G47070 51.1 3.7e-220 761.9
Cpe03g00825 CCT 25 1002 SBP-box Gene Family AT3G60030 54.5 2.7e-276 948.7
Cpe02g01546 CCT 25 1038 SBP-box Gene Family AT3G60030 51.7 1.1e-258 890.2
Cpe04g01623 . 1 196 SBP-box Gene Family AT5G50570 50.7 1.4e-44 177.6
Cpe01g00972 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.4e-39 161.0
Cpe17g01068 . 29 165 SBP-box Gene Family AT5G50570 58.3 7.7e-38 155.2
Cpe04g00482 . 63 166 SBP-box Gene Family AT5G50570 67.3 1.3e-37 154.5
Cpe03g00630 . 55 169 SBP-box Gene Family AT5G50570 64.1 3.8e-37 152.9
Cpe03g00825 CCT 181 1002 SBP-box Gene Family AT2G47070 55.9 1.5e-240 829.7
Cpe02g01546 CCT 179 1038 SBP-box Gene Family AT2G47070 51.1 3.7e-220 761.9
Cpe03g00825 CCT 25 1002 SBP-box Gene Family AT3G60030 54.5 2.7e-276 948.7
Cpe02g01546 CCT 25 1038 SBP-box Gene Family AT3G60030 51.7 1.1e-258 890.2
Cpe04g01623 . 1 196 SBP-box Gene Family AT5G50570 50.7 1.4e-44 177.6
Cpe01g00972 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.4e-39 161.0
Cpe17g01068 . 29 165 SBP-box Gene Family AT5G50570 58.3 7.7e-38 155.2
Cpe04g00482 . 63 166 SBP-box Gene Family AT5G50570 67.3 1.3e-37 154.5
Cpe03g00630 . 55 169 SBP-box Gene Family AT5G50570 64.1 3.8e-37 152.9
Cpe04g01623 . 1 196 SBP-box Gene Family AT5G50670 50.7 1.4e-44 177.6
Cpe01g00972 . 15 163 SBP-box Gene Family AT5G50670 54.6 1.4e-39 161.0
Cpe17g01068 . 29 165 SBP-box Gene Family AT5G50670 58.3 7.7e-38 155.2
Cpe04g00482 . 63 166 SBP-box Gene Family AT5G50670 67.3 1.3e-37 154.5
Cpe03g00630 . 55 169 SBP-box Gene Family AT5G50670 64.1 3.8e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006434 2 1 0 0 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 3 1 1 2 1 0 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49346 PF03110 SBP 1.30E-30 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00482 Cpe_Chr04 FPKM 1.652083 0.548953 0.687906 0.0 0.0 0.0 0.245202 0.608907 1.010074 0.52978