Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00482 ATGGATTGGGGTTGGAGAAAATTTTCTGGGGAAAGAGTCACTTTCCAGGAAAACAAACAGAATCCCACAAGTTTTTCTGACTCGATTGGATCAAATAATGAAGAAGAACCGATTCTCAAGGGTTCGAGTCAAGAAAGTTCTACCTCTCATGGATCCTCCAAGAGGACTCGATTGCTTCATGCGAGCCAGAACCAGACATGTTTGGTGGATGGCTGTGACTCTGACTTGAGCAATTGCAAGGAGTATCATCGTCGTCATAGGGTCTGCGATTTGCACTCCAAAACCCCTGTTGTGATGGTCAAAGGCGAGGAGAAACGATTCTGTCAACAGTGCAGCAGATTTCATTCGCTTGGTGAGTTTGATGAGGTTAAGAGAAGCTGTAGAAAGAGGCTTGATGGACACAATCGGCGTAGGAGGAAGCCTCAGCCTGAATCCTTGTTCATCAGTTCAAGGGATTTTCTGTCAAATTGCAAAGGTCCAATTGTGCTGCAATTCAGCGATCAACAAGTTCATGTTCCTGATGAACTTGGTAGGAGTTTATGGCCTATGAGAACTGAAGAAAACTCATCTTTGGTTCCATCAAATTCCTCTGGTTTCTTCAGTTTTGGAGGAGGAGACAACAAACAGCTGCCATTTTTGCAGCCTAAGAATGGCTCAAAGCAAGGAAAGCATATGGTTTCTTCTCAGTTTTGTTTCAATCAGCAACTTCCTGATGCAATCTCTCAGGTGAGTGAGGGGGACAGCCAGAAAACGGTGCCTCCGAATAACTCGCCCGAGGATTCGGGTTGTGCTCTCTATCTTCTGTCATCGCACCCTGTGCAAGCTCTCCCAGAGGCTGGCTTGAGCTCTTTGGTTCAGTCCCATCTGAGTCTTCCAGTCCAAACTCAAGAGGAGACTGAGCTGAATTTCAACAGCAAAGGGGCCTATTTTGCTGGTTGTTTTGTGACCTTTGACATAAAAAGGAATAGACTACTACTTTGA 981 45.36 MDWGWRKFSGERVTFQENKQNPTSFSDSIGSNNEEEPILKGSSQESSTSHGSSKRTRLLHASQNQTCLVDGCDSDLSNCKEYHRRHRVCDLHSKTPVVMVKGEEKRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFISSRDFLSNCKGPIVLQFSDQQVHVPDELGRSLWPMRTEENSSLVPSNSSGFFSFGGGDNKQLPFLQPKNGSKQGKHMVSSQFCFNQQLPDAISQVSEGDSQKTVPPNNSPEDSGCALYLLSSHPVQALPEAGLSSLVQSHLSLPVQTQEETELNFNSKGAYFAGCFVTFDIKRNRLLL 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5477767 5480250 + Cp4.1LG04g06010.1 Cpe04g00482 468044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00482 326 Gene3D - 59 128 IPR036893 GO:0003677|GO:0005634
Cpe04g00482 326 Pfam SBP domain 67 140 IPR004333 GO:0003677
Cpe04g00482 326 MobiDBLite consensus disorder prediction 1 57 - -
Cpe04g00482 326 SUPERFAMILY SBT domain 66 146 IPR036893 GO:0003677|GO:0005634
Cpe04g00482 326 MobiDBLite consensus disorder prediction 14 57 - -
Cpe04g00482 326 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 43 304 - -
Cpe04g00482 326 ProSiteProfiles Zinc finger SBP-type profile. 64 141 IPR004333 GO:0003677
Cpe04g00482 326 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 43 304 IPR044817 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00482 Cpe-Chr4:5477767 Cpe17g01068 Cpe-Chr17:8083301 4.96E-51 dispersed
Cpe18g00914 Cpe-Chr18:8150876 Cpe04g00482 Cpe-Chr4:5477767 4.41E-42 wgd
Cpe03g00630 Cpe-Chr3:3756159 Cpe04g00482 Cpe-Chr4:5477767 1.89E-156 wgd
Cpe04g00482 Cpe-Chr4:5477767 Cpe04g01623 Cpe-Chr4:12582134 2.17E-41 wgd
Cpe04g00482 Cpe-Chr4:5477767 Cpe09g00953 Cpe-Chr9:8542517 3.16E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49346 PF03110 SBP 1.30E-30 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00482 - - bhj:120070162 473.781