Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00492 ATGGGGAAGAACGAATTTCTAACCCCCAAAGCGATCGCAAACAGAATCAAGGCAAAAGGGCTCCAGAAGCTCAGATGGTATTGTCAGATGTGTCAGAAGCAGTGCCGTGATGAAAATGGCTTTAAATGTCACTGTATGAGTGAAAGCCATCAACGCCAAATGCAGATCTTTGGCCAAAACCCCCATCGTATTGTTGAAGGTTATTCCGAAGAGTTTGAGAGATCTTTTATGGAGCACATTAAGCGTAGCCATCGGTTCAGTCGTGTGGCAGCTACAGTGGTCTACAACGAATACATCAATGACAGACATCATATTCATATGAATTCAACGCAGTGGGCTACTCTCACTGAGTTTGTAAAACACTTGGGTCGAACAGGGCAGTGTAAGGTGGACGAGACACCCAAGGGTTGGTTCATTACTTACATTGATAGAGATTCAGAGACGCTTTTTAAAGAGAAAATGAAAAACAAGAGGATGAGGGCAGATTTAGCTGAAGAAGAGAAGCAAGAGAGAGAGATACAGAAGCAAATTGAGAGGGCTGAGCAATTAGCACCTTTGGCTTCTGTATCTGCTGAACCTTTGGAGGCTGAACAAACGAGGGAGTTAAAATTGGATAGTGGTGTTAAGCTTGGATTTTCTTTGGGAACAACATCAAAATTAAAGGAGAAAGGAGAGAGTTCCAGGGTGGTTTTTGATGAGGATGAGAATGGTGAGACTGCCAAGGGGAAATCTGGAGAGACTTCCAAAAACAAGATGGGTAGCGGTGGTCTGTCAGCTTTGGAGGCGTTGATGAGAGAAGAAGAGATGAAGAAGGAGAAGATTAATAGAAAGGATTACTGGCTGTGTGAGGGAATAATTGTGAAGGTCATGAGTAAGAATTTGGCTGAGATGGGATACTATAAACAGAAGGGAGTTGTGCGAAAGGTGATTGATAAATATGTTGGAGAGATTGAAACGCTTGATGGAAAGCATGTGTTGAGAGTTGATCAAGAAGAATTAGAAACAGTGATACCACAAATTGGTGGCTTAGTCAGGATAGTGAATGGGGCATATCGTGGATCGAATGCTAGGTTGTTGGGTGTTGACACCGATAAGTTTTGTGCCAAAGTGCAAATAGAAAAGGGTGTATACGATGGCCGGGTGCTTAAGGCTGTTGAATATGAAGATATCTGTAAACTTGCATCATAA 1188 42.59 MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMQIFGQNPHRIVEGYSEEFERSFMEHIKRSHRFSRVAATVVYNEYINDRHHIHMNSTQWATLTEFVKHLGRTGQCKVDETPKGWFITYIDRDSETLFKEKMKNKRMRADLAEEEKQEREIQKQIERAEQLAPLASVSAEPLEAEQTRELKLDSGVKLGFSLGTTSKLKEKGESSRVVFDEDENGETAKGKSGETSKNKMGSGGLSALEALMREEEMKKEKINRKDYWLCEGIIVKVMSKNLAEMGYYKQKGVVRKVIDKYVGEIETLDGKHVLRVDQEELETVIPQIGGLVRIVNGAYRGSNARLLGVDTDKFCAKVQIEKGVYDGRVLKAVEYEDICKLAS 395
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 5528579 5529766 - Cp4.1LG04g05860.1 Cpe04g00492 468054
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00492 395 SMART Kin17_mid_2 52 178 IPR019447 -
Cpe04g00492 395 Gene3D - 60 160 IPR038254 -
Cpe04g00492 395 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 1 394 IPR037321 -
Cpe04g00492 395 Pfam Domain of Kin17 curved DNA-binding protein 52 177 IPR019447 -
Cpe04g00492 395 Pfam KN17 SH3-like C-terminal domain 276 329 IPR041330 -
Cpe04g00492 395 MobiDBLite consensus disorder prediction 225 255 - -
Cpe04g00492 395 MobiDBLite consensus disorder prediction 225 245 - -
Cpe04g00492 395 Gene3D - 284 337 - -
Cpe04g00492 395 Coils Coil 154 183 - -
Cpe04g00492 395 CDD KOW_KIN17 340 393 IPR041995 -
Cpe04g00492 395 SUPERFAMILY beta-beta-alpha zinc fingers 26 66 IPR036236 -
Cpe04g00492 395 Coils Coil 257 277 - -
Cpe04g00492 395 PANTHER BNAA05G13760D PROTEIN 1 394 - -
Cpe04g00492 395 Gene3D - 338 394 IPR014722 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00492 Cpe-Chr4:5528579 Cpe05g00139 Cpe-Chr5:714675 7.68E-06 dispersed
Cpe04g00492 Cpe-Chr4:5528579 Cpe15g00161 Cpe-Chr15:1336806 5.57E-06 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00492 K13102 - csv:101216499 725.702