Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00495 ATGCCGGAAGAAACCACTTCGATAGATTACGTCATGGAAGCCGCCTCCGGACCTCATTTCTCCGGCCTCCGACTCGACGGGCTAATCTCCTCTCCACCTTCTTCCTCAACTTCTTCTCCCGCTCACCGCTCTTCACTCTCCGCTTCCTCTGCACAGGTCGATGCTAACTCTCCTAAGCAGCCTTTCGTCATCGGTGTTTCTGGAGGTACTGCGTCTGGGAAGACGACGGTGTGTGATATGATTATACAGCAACTCCATGATCATAGGGTTGTGCTGGACTCGTTTTACCGCGGGTTGACAGCCGAGGAACTAGAACGCGTGCACGAGTATAACTTTGATCATCCTGATTCTTTTGACACCGAGCAGCTTTTGGATTGCGTCGAGAAGCTAAAGAGTGGGCAATCTTACCATGTCCCAATTTATGATTTTAAGACTCATCAACGCTGTGTAGATAGCTTTCGACAGGTAAATGCATCTGATGTTATCATCGTGGAAGGAATTCTGGTTTTCCATGACCAAAGAGTCCGCAATCTCATGAATATGAAGATATTTGTTGACACAGATGCTGATGTGAGGCTTGCTCGTAGAATTAGACGTGATACCGTAGAAAGGGGCAGAGACATAAACTCCGTTCTTGAACAGTATGCGAAGTTTGTAAAACCTGCTTTTGATGATTTCATTCTGCCATCAAAGAAGTATGCTGATGTGATCATACCACGTGGAGGTGATAACCATGTTGCAATTGATTTGATTGTGCAACACATCCATACAAAGTTAGGCCAGCATGACCTATGCAAAATATACCCCAATGTTACTGTCATTCAATCAACATTTCAGATTAGAGGCATGCATACATTAATTCGAGATCGGGACATCTCAAAGCACGACTTTGTTTTCTATTCAGACCGCCTTATACGTCTGGTTGTGGAGCATGGCCTTGGCCATTTGCCGTTTACTGAAAAACAAGTGGTCACTCCAACAGCATCTGTATACACTGGGGTTGATTTCTGCAAAAAACTATGTGGGGTATCCATCGTTCGAAGTGGTGAAAGCATGGAAAACGCGTTGCGTGCATGTTGCAAAGGGATAAAAATCGGGAAGATTCTGATTCACCGTGAGGGAGATAACGGGAAGCAGCTGATATACGAGAAATTACCGAATGATATATCGGAGCGACATGTCCTACTCCTCGATCCTGTTCTCGCTACCGCAATTGACCTACTCATACAGAAGGGAGTTCCAGAATCACACATCATATTCCTCAACTTGATATCTGCCCCGGAGGGAATTCACTGTGTTTGCAAACGATACCCGTTCTTGAAAATTGTCACTTCCGAGATCGACGATGGATTGAACGAAGAGTATCGTGTCGTACCAGTGCGCACTCATTCTTCTCCTTCGCCGCCACCGCCGCTGCCGCCACCTCTGCTGTCTTTCTCTGCGAAATCAACTCCGGACTCACTATCCTCGCCGGCGTGTGCACTCCAGTGCACTCACTTTCAATCGTGCTCCGGATGCACACACGAGTTCGACCTCCACCGGCCGGTCATCGTTGAGGAGGCGACTCAATTCTTCAACAATCTTGGAGTATCGGATTTTACATTTGATAGTTGCAAACTGTGGGGATGGAGGTGCCGTGCGAAATTAGCCGTTCGTGGCTCGTCTACAAGCCCTATGATTGGGCTTTATCAAGAGGGAACTCATAATGTCGTGGATATTCCTGATTGCAAAGCTCATCACCCTAATATAAATGCGGCAGTTCAATTGTTAAAACGAGGTATCACTGAATTAAACGTAGAGCCTTATGACGAAGATCAGGGGACTGGTGATTTGCGATATGTTCAGATGGCTGTGACGACTTATAGCACATCCCTTCCTTCCTCAGAAAGATACAAAAATGGTTACATGCTAACTAAGTTGATATTAGGATGTAAGATACAGATAGCTTTAGTTTGGAATTCAAGGAGTGAAACTTCACAGAATTCTGACAAGCTAAATGCATTAGCCAATTTCTTATGGAAAAATGGTGGTGCCCGAAGTAATACTCATCTAGTTCATTCTGTGTGGGCAAATTTTCAAACATCATCTAACAATGTAATATTTGGTAATAGATGGAGGCATCTTTTAGGCGAAAGAGATTTTTGGGAGCATGTTGGTGGAATAGACATTTGCTTGACACCATCAAGTTTTGGCCAAGCAAATACACAGGCTTTCGATAGCTTGCTCCGGAAGTTGCAGAAGTATGTTCCATATGGAGCATCAGTTGCTGATTTATTTGTGAAGTGTGTCGAGGTCAACAAAGAGTCTAAGCTATCATTTGAGAAAACAGTCGAACGTCTACCGGACCGAGTTGATGGCAGTATCAGCTGGCACCATGCAGACACTTCAAAAGATCCTCTTACTTGGATTATGGGATCAGACGTAGTTGTTGTCGATCCGCCAAGAAAAGGTTTGGATGCATCACTTGCTGATACATTGAGAGATATAGCATCACTAAAGCGTAAAGTGAAGTCATTATCTAAAAGCCCACATTTGACGGATAAGAAAGATGAAAAAAGGCCATGGGTTTTACGAGCAAAGGAAGAAACAGTCCAAATTGGGAGTACAGCTTTGGAACCAAATCATTCACTGCCTCAGACTCTTATTTATATAAGTTGTGGATGGGAAAGCTTCAAGGAGGATTGCAAGATGTTACTGTCTAGCAATGCGTGGCATTTGGCGAAGGCCCATGGTTTTAATTTCTTTCCTGGCACCCAGAGTATTGAGGTTTTGGCCATTTTCAAGAGGGGACAGGGAGTGCCCCAGAAGAAAAAGAAAGTGTTGAAGAAGAAAAAGAAACCAACTGTGAGAGTTGCATCAAGTCCTCATATTAGGGCCATGACTTCAAATAATTTCCATTTGGCTGAAGATATAACTAGAATGCTCCTTGCAGGCTATCTTCCTCCTCCAACTGAACTCTTAGGATGA 2967 44.35 MPEETTSIDYVMEAASGPHFSGLRLDGLISSPPSSSTSSPAHRSSLSASSAQVDANSPKQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLDSFYRGLTAEELERVHEYNFDHPDSFDTEQLLDCVEKLKSGQSYHVPIYDFKTHQRCVDSFRQVNASDVIIVEGILVFHDQRVRNLMNMKIFVDTDADVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFILPSKKYADVIIPRGGDNHVAIDLIVQHIHTKLGQHDLCKIYPNVTVIQSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTASVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHREGDNGKQLIYEKLPNDISERHVLLLDPVLATAIDLLIQKGVPESHIIFLNLISAPEGIHCVCKRYPFLKIVTSEIDDGLNEEYRVVPVRTHSSPSPPPPLPPPLLSFSAKSTPDSLSSPACALQCTHFQSCSGCTHEFDLHRPVIVEEATQFFNNLGVSDFTFDSCKLWGWRCRAKLAVRGSSTSPMIGLYQEGTHNVVDIPDCKAHHPNINAAVQLLKRGITELNVEPYDEDQGTGDLRYVQMAVTTYSTSLPSSERYKNGYMLTKLILGCKIQIALVWNSRSETSQNSDKLNALANFLWKNGGARSNTHLVHSVWANFQTSSNNVIFGNRWRHLLGERDFWEHVGGIDICLTPSSFGQANTQAFDSLLRKLQKYVPYGASVADLFVKCVEVNKESKLSFEKTVERLPDRVDGSISWHHADTSKDPLTWIMGSDVVVVDPPRKGLDASLADTLRDIASLKRKVKSLSKSPHLTDKKDEKRPWVLRAKEETVQIGSTALEPNHSLPQTLIYISCGWESFKEDCKMLLSSNAWHLAKAHGFNFFPGTQSIEVLAIFKRGQGVPQKKKKVLKKKKKPTVRVASSPHIRAMTSNNFHLAEDITRMLLAGYLPPPTELLG 988
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5540866 5551629 - Cp4.1LG04g05950.1 Cpe04g00495 468057

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00495 988 MobiDBLite consensus disorder prediction 23 53 - -
Cpe04g00495 988 CDD UMPK 63 258 IPR000764 -
Cpe04g00495 988 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 251 IPR027417 -
Cpe04g00495 988 Pfam Phosphoribulokinase / Uridine kinase family 63 246 IPR006083 GO:0005524|GO:0016301
Cpe04g00495 988 SUPERFAMILY PRTase-like 261 460 IPR029057 -
Cpe04g00495 988 TIGRFAM udk: uridine kinase 60 258 IPR000764 -
Cpe04g00495 988 PRINTS Uridine kinase signature 190 200 - -
Cpe04g00495 988 PRINTS Uridine kinase signature 133 148 - -
Cpe04g00495 988 PRINTS Uridine kinase signature 204 215 - -
Cpe04g00495 988 PRINTS Uridine kinase signature 226 239 - -
Cpe04g00495 988 PRINTS Uridine kinase signature 61 78 - -
Cpe04g00495 988 Pfam Uracil phosphoribosyltransferase 276 459 - -
Cpe04g00495 988 Gene3D - 544 730 - -
Cpe04g00495 988 PANTHER URIDINE KINASE 16 448 - -
Cpe04g00495 988 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 496 928 IPR029063 -
Cpe04g00495 988 Gene3D - 262 463 IPR029057 -
Cpe04g00495 988 PANTHER URIDINE KINASE-LIKE PROTEIN 2, CHLOROPLASTIC 16 448 IPR029930 GO:0004849|GO:0044206
Cpe04g00495 988 Coils Coil 822 842 - -
Cpe04g00495 988 CDD PRTases_typeI 335 444 IPR000836 -
Cpe04g00495 988 Gene3D - 57 261 IPR027417 -
Cpe04g00495 988 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 501 930 IPR010280 GO:0006396|GO:0008173
Cpe04g00495 988 Gene3D Vaccinia Virus protein VP39 764 929 IPR029063 -
Cpe04g00495 988 MobiDBLite consensus disorder prediction 28 53 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00495 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - cpep:111793699 930.243
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01387 Cpe-Chr1:8348306 Cpe04g00495 Cpe-Chr4:5540866 2.27E-10 dispersed
Cpe02g01427 Cpe-Chr2:12387639 Cpe04g00495 Cpe-Chr4:5540866 0 dispersed
Cpe04g00495 Cpe-Chr4:5540866 Cpe09g00252 Cpe-Chr9:1452141 1.76E-16 dispersed
Cpe05g00797 Cpe-Chr5:4937745 Cpe04g00495 Cpe-Chr4:5540866 3.01E-09 dispersed
Cpe04g00495 Cpe-Chr4:5540866 Cpe06g00842 Cpe-Chr6:5415010 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe16g00281 CST 82 562 PRT Gene Family AT2G16570 84.5 2.5e-240 828.6
Cpe05g01298 CST 70 556 PRT Gene Family AT2G16570 83.2 2.7e-239 825.1
Cpe05g01298 CST 72 556 PRT Gene Family AT4G34740 85.0 1.1e-243 839.7
Cpe16g00281 CST 82 562 PRT Gene Family AT4G34740 85.3 1.7e-241 832.4
Cpe16g00281 CST 25 535 PRT Gene Family AT4G38880 69.5 3.0e-200 695.3
Cpe05g01298 CST 69 529 PRT Gene Family AT4G38880 73.0 1.9e-194 676.0
Cpe01g02140 . 1 170 PRT Gene Family AT1G71750 59.9 2.3e-60 229.2
Cpe06g00842 . 40 468 PRT Gene Family AT1G55810 87.2 1.1e-219 759.6
Cpe02g01427 . 19 469 PRT Gene Family AT1G55810 73.2 2.2e-191 665.6
Cpe04g00495 . 19 459 PRT Gene Family AT1G55810 72.5 6.8e-185 644.0
Cpe06g00842 . 65 467 PRT Gene Family AT3G27440 77.2 1.1e-184 643.3
Cpe02g01427 . 80 469 PRT Gene Family AT3G27440 74.6 1.4e-171 599.7
Cpe04g00495 . 80 459 PRT Gene Family AT3G27440 74.0 4.6e-167 584.7
Cpe02g01427 . 1 469 PRT Gene Family AT3G27190 85.5 4.1e-236 814.3
Cpe04g00495 . 1 459 PRT Gene Family AT3G27190 84.6 6.8e-231 797.0
Cpe06g00842 . 51 467 PRT Gene Family AT3G27190 79.9 2.8e-200 695.3
Cpe10g00910 . 4 266 PRT Gene Family AT3G53900 61.0 1.2e-92 337.0
Cpe06g00842 . 30 468 PRT Gene Family AT4G26510 81.7 4.3e-222 767.7
Cpe02g01427 . 11 469 PRT Gene Family AT4G26510 74.3 8.4e-202 700.3
Cpe04g00495 . 7 459 PRT Gene Family AT4G26510 74.2 1.1e-196 683.3
Cpe02g01427 . 1 469 PRT Gene Family AT5G40870 86.0 7.0e-236 813.5
Cpe04g00495 . 1 459 PRT Gene Family AT5G40870 84.6 3.1e-231 798.1
Cpe06g00842 . 51 470 PRT Gene Family AT5G40870 78.8 1.4e-199 693.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00495 Cpe_Chr04 FPKM 23.030613 24.634432 16.298244 16.622017 14.927257 12.591426 13.935573 28.287642 29.486105 26.880436