Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00534 ATGTCTTCTTCCACCTACTCCAATTCTCCTTGTGCAGCCTGCAAGTTCCTACGTCGAAAATGTCTTCCGGGCTGCGTTTTCGCGCCCTATTTCCCGTCGGAGGAGCCACAAAAGTTCGCCAACGTCCACAAGATCTTCGGAGCTAGCAATGTCAGCAAATTACTAAACGAAGTCCAGCCACACCAACGGGAGGACGCCGTGAACTCGCTCGCTTACGAGGCCGAGGCGAGGATGAAAGACCCCGTCTACGGCTGCGTCGGCGCCATCTCGATCCTCCAAAGACAAGTCATCAAGCTTCAAAGAGAACTCGACGCTACCAACGCTAACCTCATTCGCTACGCCTGCAGTGAACTCCCCGCCCCGTCATCGTCGTCGCAGTATGCTCGGAGATCGTCATCGACAAGTCACGTCGGAAGCTCGTCGACCTCTAGCTATGGCCATTACTATTCTGGCCTCTACTTTTGTGGCCCTTGTGGAGATGACCATGACAAAGGAGAAGAACACAAGTAA 510 53.73 MSSSTYSNSPCAACKFLRRKCLPGCVFAPYFPSEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQRELDATNANLIRYACSELPAPSSSSQYARRSSSTSHVGSSSTSSYGHYYSGLYFCGPCGDDHDKGEEHK 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5794118 5794627 + Cp4.1LG04g05500.1 Cpe04g00534 468096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00534 169 MobiDBLite consensus disorder prediction 120 142 - -
Cpe04g00534 169 Coils Coil 89 109 - -
Cpe04g00534 169 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 140 - -
Cpe04g00534 169 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 1 140 - -
Cpe04g00534 169 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Cpe04g00534 169 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Cpe04g00534 169 Coils Coil 162 169 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00534 Cpe-Chr4:5794118 Cpe18g00859 Cpe-Chr18:7908787 8.91E-72 dispersed
Cpe01g02505 Cpe-Chr1:20588619 Cpe04g00534 Cpe-Chr4:5794118 3.17E-50 transposed
Cpe01g02332 Cpe-Chr1:19603996 Cpe04g00534 Cpe-Chr4:5794118 1.26E-71 wgd
Cpe04g00534 Cpe-Chr4:5794118 Cpe04g01574 Cpe-Chr4:12321467 3.97E-70 wgd
Cpe04g00534 Cpe-Chr4:5794118 Cpe09g01010 Cpe-Chr9:8933543 2.09E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49348 PF03195 LOB 3.50E-42 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00534 - - cpep:111792844 320.472