Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00550 ATGGCGGTTCTGCCTCTGCAGCTTCCTTGTGTGAGGACTATTGACAGTTCGTCTTCGCCATTGTTGAGAGGAGGTAAATCGTCGTTGTTTTGGGGAAGACATTTGCGCTTGGGAATTGGAGGTATTAGGGATGGTCCGGGAGTGAAAGCTCGATTCAATGGTCGAGGTTTTGAGGTTTTCGCCATGTCGGATGGCTCTTCTTCTTCGTATAAGATGAATCTCAATGAGTATATGGTTACTCTCCAGAAACCGCTCGGCATTCGGTTCGCGATTTCCGTCGATGGAAGAATCTTCGTTCACTCGCTTAAGAAAGGAGGTAATGCTGAGAAGTCGAGAATAATCATGGTGGGGGACACTTTAAAGAAAGCGAGCGATTCTTCTGGCGTCAAGCTCGTTGAGATCAAAGACTTTGGAGATACACAGATGATGCTGAAGGAGAAAGCAGGGTCTTTTAGCCTGGTTCTTGAAAGACCTTTCACTCCTTTTCCGATTCAACATCTTCTGCTTTCAAATGATTTAGATATTTTATTTAATCGAGGTCGAGTACCTATTGCTACATGGAAGAAAGAAGTTTTGGCATCAAATTTACAAACACCTGATGCAAACATTGGGAATTCTGGCTTTGCAACTTTCTCCTCTAAGTTCTCAACAGCATTAGGTTGGAAACTTCTAAATAATCAAAATGGAGATGTTAAATCACCCATGCAGAGAAACACTCTCACGCCTCAGATCAGCCAGGTTGTTTGTATATTTACCGAAGAGGATCCTGGAGAAGGAGAATGGGCTCATGGGAGCTTTCCCATAGACGAATATGTCAAGGCATTAGAACGGTCTAAAGGGGAGCTATATTATGATCACTCTCGTGGTATGAGCTATAGTAAGATCACAGAGCAAATTTATGTGGGGTCATGTTTACAGACTGAAGCAGATGTTGAGGCTTTGTCAAATAACGTGGGAATCACCGCAGTTCTGAATTTTCAAAGTGCAACTGAGGCAGAAAACTGGGGGATTAGCTCCAAGTTAATCAATGAGTCGTGCCAAAAATATGATATTCTCATGATCAACTATCCTATTAGGGAAGGAGATTCTTATGATATGAGGAAAAAACTACCATTTTGTGTGGGCCTACTTCTACGACTGTTAAAAAAGAACCATCGAGTTTTTGTAACTTGTACCACCGGTTTTGATCGAGCTCCAGCAAGTGTGATTGCATATCTACACTGGATGACTGATACTTCTCTTCATGCAGCTTATAATTTTATCACCAGTTTGCATTCCTGCAAACCTGACAGGCCAGCAATTGCTTGGGCTACCTGGGATCTCATAGCAATGGTGGAACATGGAAGGCACGATGGACCTCCCACTCACGCCGTTACTTTTGTATGGAATGGTCAAGAGGGGGAGGATGTAAATTTGGTGGGAGATTTTACTGGTAACTGGAAAGAACCGGTCAAGGCTAGTCACAAGGGTGGGCCAAGATATGAAGTAGAAATGAAACTTCCTCAAGGGAAGTATTACTACAAGTACATCACAAATGGTCAGTGGAGGCATTCAACAGCTTCGCCTGCTGAAAGGGATGATAGGGGGAATGTCAACAATGTTATAGTCATTGGCGACACTGCCAGTGTCAGGCCTTCAGATGCAAATATTGTGAAGGTAATTGAAAGACCACTTACAGAAAATGAGAGGTTTATGTTGGCGAAAGCGGCTCGTTGTGTTGCATTTTCGGTATGTCCAATTAGACTAACTCCAAAGTAA 1758 43.06 MAVLPLQLPCVRTIDSSSSPLLRGGKSSLFWGRHLRLGIGGIRDGPGVKARFNGRGFEVFAMSDGSSSSYKMNLNEYMVTLQKPLGIRFAISVDGRIFVHSLKKGGNAEKSRIIMVGDTLKKASDSSGVKLVEIKDFGDTQMMLKEKAGSFSLVLERPFTPFPIQHLLLSNDLDILFNRGRVPIATWKKEVLASNLQTPDANIGNSGFATFSSKFSTALGWKLLNNQNGDVKSPMQRNTLTPQISQVVCIFTEEDPGEGEWAHGSFPIDEYVKALERSKGELYYDHSRGMSYSKITEQIYVGSCLQTEADVEALSNNVGITAVLNFQSATEAENWGISSKLINESCQKYDILMINYPIREGDSYDMRKKLPFCVGLLLRLLKKNHRVFVTCTTGFDRAPASVIAYLHWMTDTSLHAAYNFITSLHSCKPDRPAIAWATWDLIAMVEHGRHDGPPTHAVTFVWNGQEGEDVNLVGDFTGNWKEPVKASHKGGPRYEVEMKLPQGKYYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5925648 5932236 + Cp4.1LG04g05360.1 Cpe04g00550 468112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00550 585 ProSiteProfiles PDZ domain profile. 78 159 IPR001478 GO:0005515
Cpe04g00550 585 CDD E_set_AMPKbeta_like_N 458 537 - -
Cpe04g00550 585 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 55 584 - -
Cpe04g00550 585 Gene3D Protein tyrosine phosphatase superfamily 284 567 IPR029021 -
Cpe04g00550 585 Pfam Glycogen recognition site of AMP-activated protein kinase 458 539 IPR032640 -
Cpe04g00550 585 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 55 584 IPR030066 GO:0005983
Cpe04g00550 585 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 283 429 IPR029021 -
Cpe04g00550 585 SUPERFAMILY E set domains 455 538 IPR014756 -
Cpe04g00550 585 CDD DSP_laforin-like 290 436 IPR045204 GO:0019203|GO:0046838
Cpe04g00550 585 Gene3D Immunoglobulins 445 541 IPR013783 -
Cpe04g00550 585 SUPERFAMILY PDZ domain-like 63 164 IPR036034 GO:0005515
Cpe04g00550 585 Pfam Dual specificity phosphatase, catalytic domain 306 423 IPR000340 GO:0008138|GO:0016311
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00550 Cpe-Chr4:5925648 Cpe09g00392 Cpe-Chr9:2415875 4.27E-30 dispersed
Cpe04g00550 Cpe-Chr4:5925648 Cpe01g01265 Cpe-Chr1:7587491 2.10E-31 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00550 - - cmos:111435043 1160.21