Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00554 ATGAAGGAAAAGAGTGAAACTGGAGGTGGGTATGTGAGGGCAGATCAGATAGATCTGAAGAGCTTAGACGAGCAGTTGCAGAGACATTTGAGCAAAGCATGGACTATGGAGAAGAACAAGAGCAAGGTAGACGAAGGCGGCGGCGGCGGCGGCGGTGGTGGTGGTGGAAAGCTGCCGATCGCCAGGCAGGAATGGGAGATTGATCCTTCTAAACTCATCATCAAAAGCGTCATAGCTCGTGGTACTTTTGGAACTGTTCATCGTGGAATTTATGATGGCCAAGATGTTGCTGTTAAACTTCTTGACTGGGGTGAAGAGGGTCATAGGTCGGAGGCAGAAATCGCGTCGCTTAGAGCAGCTTTTACACAAGAAGTTGTTGTTTGGCACAAGCTTGACCATCCTAACGTTACGAAGTTTATAGGAGCAACAATAGGCTCCTCAGATCTACAAGTACAAACAGAAAATGGCCAAATTGGCATGCCGAGCAATATTTGTTGTGTCGTTGTTGAATATTGTCCTGGAGGTGCTCTCAAATCTTACCTCATAAAGAACAGGAGGAAAAAGCTGGCGTTCAAAGTAGTCGTCCAGCTAGCATTAGACCTTGCAAGAGGGTTGAGCTATCTTCACTCACAGAAGATTGTCCATAGAGATGTCAAGACAGAAAATATGCTTCTGGACAAAACAAGAACGGTAAAAATTGCAGACTTCGGCGTTGCTCGTGTCGAGGCCTCAAATCCCAATGATATGACTGGCGAGACTGGAACCCTTGGTTATATGGCTCCAGAGGTTCTCAATGGCAATCCATATAACAGGAAATGTGATGTCTACAGCTTTGGCATCTGTTTGTGGGAAATATACTGCTGCGATATGCCGTATCCCGACCTTAGCTTCTCGGAAGTGACTTCAGCGGTTGTCCGACAGAATCTTCGGCCAGAGATTCCTCGGTGTTGCCCGAGCTCGCTTGCAAATGTAATGAAGCGATGTTGGGACGCTAACCCAGACAAGCGTCCAGAGATGGATGAGGTACCGAGGTCCTTGAACGATGGCAGCAGCAATAATGCAACGTCGAAGATTCGGATTGTAATTTGTCCAATTGAAAAGGAACTGGAACTTGAGAATGAAGGGAACAAGTAG 1134 46.83 MKEKSETGGGYVRADQIDLKSLDEQLQRHLSKAWTMEKNKSKVDEGGGGGGGGGGGKLPIARQEWEIDPSKLIIKSVIARGTFGTVHRGIYDGQDVAVKLLDWGEEGHRSEAEIASLRAAFTQEVVVWHKLDHPNVTKFIGATIGSSDLQVQTENGQIGMPSNICCVVVEYCPGGALKSYLIKNRRKKLAFKVVVQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDANPDKRPEMDEVPRSLNDGSSNNATSKIRIVICPIEKELELENEGNK 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5962969 5967105 + Cp4.1LG04g05350.1 Cpe04g00554 468116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00554 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Cpe04g00554 377 PRINTS Tyrosine kinase catalytic domain signature 207 225 IPR001245 GO:0004672|GO:0006468
Cpe04g00554 377 PRINTS Tyrosine kinase catalytic domain signature 317 339 IPR001245 GO:0004672|GO:0006468
Cpe04g00554 377 PRINTS Tyrosine kinase catalytic domain signature 169 182 IPR001245 GO:0004672|GO:0006468
Cpe04g00554 377 PRINTS Tyrosine kinase catalytic domain signature 273 295 IPR001245 GO:0004672|GO:0006468
Cpe04g00554 377 PANTHER DUAL-SPECIFICITY KINASE TKL-PL-4 FAMILY-RELATED 1 347 - -
Cpe04g00554 377 ProSiteProfiles Protein kinase domain profile. 72 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g00554 377 Gene3D Phosphorylase Kinase; domain 1 60 155 - -
Cpe04g00554 377 Gene3D Transferase(Phosphotransferase) domain 1 172 373 - -
Cpe04g00554 377 SUPERFAMILY Protein kinase-like (PK-like) 60 344 IPR011009 -
Cpe04g00554 377 SMART serkin_6 72 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g00554 377 Pfam Protein tyrosine and serine/threonine kinase 74 344 IPR001245 GO:0004672|GO:0006468
Cpe04g00554 377 MobiDBLite consensus disorder prediction 32 58 - -
Cpe04g00554 377 CDD STKc_MAP3K-like 78 342 - -
Cpe04g00554 377 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 347 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00554 Cpe-Chr4:5962969 Cpe08g00274 Cpe-Chr8:1762011 2.19E-178 dispersed
Cpe18g00839 Cpe-Chr18:7743553 Cpe04g00554 Cpe-Chr4:5962969 0 wgd
Cpe03g00561 Cpe-Chr3:3329868 Cpe04g00554 Cpe-Chr4:5962969 1.04E-58 wgd
Cpe04g00554 Cpe-Chr4:5962969 Cpe04g01549 Cpe-Chr4:12135714 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62338 PF07714 PK_Tyr_Ser-Thr 1.50E-63 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00554 - - csv:101212631 660.603