Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00557 ATGGAATCCGGCCGGTTCTTGTTCAATCCCCCTGCTTGCGGCGGCAACATGCTTTGCCTTGGCGGAGCCGGTGGTGGCGATCGTTTTCTGCGAGAAGGAAGAACAATGATGAGCATGAGCATGAACATGAGCATGAGCATGCAAGAGAGTCCAAATGGGAGACCATTTTTCAGATCCCCAGATGATCTTTACGACGATGAATATTACGACGAGCTTTACCCCGAGAAGAAGCGCCGCTTGGCCAACGAGCAGGTTCAAATGCTGGAGAAGAGTTTTGAGGAAGAGAACAAACTGGAGCCAGAGAGGAAGTCCCAACTAGCCAAGAAGCTGGGGCTGCAGCCAAGGCAGGTGGCCGTGTGGTTCCAGAACCGCCGTGCGCGGTGGAAGACGAAGCAGCTCGAAAGGGACTATGATGTTCTTAAAGCTTCATATGATTTGCTTATGTCAAACTATGACTCCATTATCAAAGAGAATGCCGTGCTTAAATCTGAGGTGGCTTCCTTAACTGAGAAATGTGTAGCTAAAGAGCTTGATGGAGGAGAAGCACCAATTCCACGTACGACTTCGGAGCCTCTTCGAGCAGACACTGCCCATGTCTCCGCCCCACACTCCGGTGGCTCCGGGAGAAAGGCTGAAGATCGTCTCAGTTCAGGGAGCGATAGCAGTGCAGTGATTGACGATAATTGTCTACAACTCATCGACAGCGGCGATTCTTACTTCCTGAGTAACGAGTATCCACAACGTGCGCCTCTACCTCCTGGGCTGCAAATGGAACATGATGACAGGAATGATAATAGCAATTACTTGTTCTCAGATATGTTTGCAGAAACAAACCAACAGAACCAGGAGGGAGGGCCTCCAGCTTGGTGGGCATGGCCTTAG 882 50.68 MESGRFLFNPPACGGNMLCLGGAGGGDRFLREGRTMMSMSMNMSMSMQESPNGRPFFRSPDDLYDDEYYDELYPEKKRRLANEQVQMLEKSFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDLLMSNYDSIIKENAVLKSEVASLTEKCVAKELDGGEAPIPRTTSEPLRADTAHVSAPHSGGSGRKAEDRLSSGSDSSAVIDDNCLQLIDSGDSYFLSNEYPQRAPLPPGLQMEHDDRNDNSNYLFSDMFAETNQQNQEGGPPAWWAWP 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5986887 5989151 + Cp4.1LG04g05250.1 Cpe04g00557 468119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00557 293 MobiDBLite consensus disorder prediction 274 293 - -
Cpe04g00557 293 CDD homeodomain 76 132 IPR001356 GO:0003677
Cpe04g00557 293 ProSiteProfiles 'Homeobox' domain profile. 71 131 IPR001356 GO:0003677
Cpe04g00557 293 ProSitePatterns 'Homeobox' domain signature. 106 129 IPR017970 GO:0000981|GO:0006355
Cpe04g00557 293 Pfam Homeodomain 76 129 IPR001356 GO:0003677
Cpe04g00557 293 MobiDBLite consensus disorder prediction 245 268 - -
Cpe04g00557 293 MobiDBLite consensus disorder prediction 179 222 - -
Cpe04g00557 293 Coils Coil 151 171 - -
Cpe04g00557 293 SMART HOX_1 74 135 IPR001356 GO:0003677
Cpe04g00557 293 Gene3D - 71 137 - -
Cpe04g00557 293 PRINTS Lambda-repressor HTH signature 102 111 IPR000047 GO:0003677
Cpe04g00557 293 PRINTS Lambda-repressor HTH signature 111 127 IPR000047 GO:0003677
Cpe04g00557 293 SUPERFAMILY Homeodomain-like 72 133 IPR009057 -
Cpe04g00557 293 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 1 259 - -
Cpe04g00557 293 Pfam Homeobox associated leucine zipper 131 171 IPR003106 GO:0006355|GO:0043565
Cpe04g00557 293 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 259 IPR045224 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00557 Cpe-Chr4:5986887 Cpe20g00203 Cpe-Chr20:1171178 1.62E-42 dispersed
Cpe01g02355 Cpe-Chr1:19722842 Cpe04g00557 Cpe-Chr4:5986887 1.49E-62 wgd
Cpe13g00908 Cpe-Chr13:7748511 Cpe04g00557 Cpe-Chr4:5986887 5.49E-77 wgd
Cpe03g00557 Cpe-Chr3:3293854 Cpe04g00557 Cpe-Chr4:5986887 1.41E-151 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49350 PF00046 Homeodomain 2.00E-17 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00557 K09338 - csv:101212142 426.017