Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00573 ATGGGAAAGGGAAATGGAGCACTAGGAGCTTCCAAGGGAAAGGCTAACCCTGGCAGAGCATCAATTCTGGCTCTTGGGAAGGCCTTCCCTCCCCAACTTGTCCTTCAAGACTACCTGGTTGATAGCTATTTCAAGGATACGAGCTGCGATGATCTAGACCTCAAGCGGAAGCTCACTCGACTCTGCAAGACAACATCAGTCAAAACTAGATACGTGGTGATGTCGGAAGAGATCTTGAAGAAGCACCCAGAGCTGGCAATGGAAGGCCAAGCAACCATAAAGCAAAGACTGGAGATCTGCAACAAAGCTGTGACAGACATGGCCATTGAAGCCTCACAAGCTGCTATTAAGAACTGGGGAAGGCCACTTTCAGACATTACCCATTTAGTCTATGTCTCTTCAAGTGAAGCTCGCCTGCCTGGTGGTGATCTCTTCCTAGCAAGAGGCCTTGGACTCAGCCCTCACACCCAACGGCTCATGCTTTACTTCATGGGTTGCTCTGGAGGCGTGGCAGGCCTTAGAGTCGCCAAAGACTTGGCTGAAAACAATCCCGGAAGCCGAGTTCTGCTTGTCACCTCTGAAACCACCATTATTGGCTACAAGCCACCAAGTGCCCATCGTCCATACGATCTGGTAGGCGTGGCGCTATTTGGGGATGGTGCTGGGGCAATGCTAATTGGCGCGGACCCTGTTTTGGCCATTGAACGGCCACTCTTTGAGCTGCACACCGCAACCCAGAAATTCATTCCAAACACCCAGAACGTAATCGATGGGAGAATGTCAGAGGAGGGTATTAGCTTCACAATAGCAAGAGAACTTCCTCAAATAATCGAAGATAACATCGGAAGTTTCTGTGAGACATTTCTTCAAACAGTTGGGCTGCATGAGAAAGAATACAACAAAATCTTCTGGGCAGTACATCCAGGTGGGCCAGCGATACTGAATAAGCTAGAGAAGAGACTCGAATTGTTACCTAAGAAGCTGAAGGCGAGCCGGCGAGCTCTGATGGACTATGGAAATGCGAGTAGTAACACAATCGTGTATGTGTTGGAATACATGGTGGATGAGAGCTTGAAGACGAAGATGGGTGGTGGGGAAATTGAGGAATGGGGATTGATTCTGGCGTTTGGACCTGGGATTTCGTTTGAAGGGATTCTGGCGAGGAATCTGTCCGTGTGA 1179 49.28 MGKGNGALGASKGKANPGRASILALGKAFPPQLVLQDYLVDSYFKDTSCDDLDLKRKLTRLCKTTSVKTRYVVMSEEILKKHPELAMEGQATIKQRLEICNKAVTDMAIEASQAAIKNWGRPLSDITHLVYVSSSEARLPGGDLFLARGLGLSPHTQRLMLYFMGCSGGVAGLRVAKDLAENNPGSRVLLVTSETTIIGYKPPSAHRPYDLVGVALFGDGAGAMLIGADPVLAIERPLFELHTATQKFIPNTQNVIDGRMSEEGISFTIARELPQIIEDNIGSFCETFLQTVGLHEKEYNKIFWAVHPGGPAILNKLEKRLELLPKKLKASRRALMDYGNASSNTIVYVLEYMVDESLKTKMGGGEIEEWGLILAFGPGISFEGILARNLSV 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6160081 6166870 + Cp4.1LG04g05170.1 Cpe04g00573 468135

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00573 392 SUPERFAMILY Thiolase-like 237 388 IPR016039 GO:0016746
Cpe04g00573 392 SUPERFAMILY Thiolase-like 17 232 IPR016039 GO:0016746
Cpe04g00573 392 Pfam Chalcone and stilbene synthases, N-terminal domain 12 230 IPR001099 -
Cpe04g00573 392 Pfam Chalcone and stilbene synthases, C-terminal domain 240 390 IPR012328 -
Cpe04g00573 392 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 13 390 IPR011141 GO:0009058|GO:0016747
Cpe04g00573 392 Gene3D - 238 390 IPR016039 GO:0016746
Cpe04g00573 392 PANTHER TYPE III POLYKETIDE SYNTHASE B 13 390 - -
Cpe04g00573 392 CDD CHS_like 20 386 - -
Cpe04g00573 392 Gene3D - 7 237 IPR016039 GO:0016746
Cpe04g00573 392 PIRSF PKS_III 9 392 IPR011141 GO:0009058|GO:0016747
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00573 - - - csv:101210994 669.848
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00573 Cpe15g00577 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00573 Cpe-Chr4:6160081 Cpe08g00632 Cpe-Chr8:4206697 1.80E-161 dispersed
Cpe15g00577 Cpe-Chr15:6601486 Cpe04g00573 Cpe-Chr4:6160081 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g95 . . . . . Bpe12g00109 . . . Cmo11g01722 . . . . . Cpe04g00573 Cpe15g00577 . . . . . . . Cla02g00450 Cam02g0458 Cec02g0457 Cco02g0476 Clacu02g0459 Cmu02g0454 Cre02g0788 . . . . . . . . Blo04g00551 Blo13g00525 Bda15g01045 . . . . Bma08g00766 . . . Cma11g01399 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002086 1 1 2 2 1 2 2 2 2 2 2 2 4 2 2 4 2 4 3 2 2 2 2 2 2 2 2 2 2 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00573 Cpe_Chr04 FPKM 166.946014 196.298141 194.485962 206.487122 130.412262 122.577766 127.32679 158.542633 162.033035 161.127869