Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00579 ATGACGATTTCCGAGAATACGAAGGGTCTGATTCTGGCTATGGCGTCGAGTGCGTTTATTGGATCGAGTTTTATCTTGAAGAAGAAAGGACTTAAGCGTGCCGGAGCCACAGGGGCGAGAGCAGGTGTTGGTGGTTATACGTACCTGTTAGAGCCACTTTGGTGGGCAGGCATGGTTATAATGATAATTGGAGAAGTTGCAAACTTTGTAGCATATATCTATGCCCCAGCAGTTTTAGTCACGCCTCTCGGTGCACTGAGCATTATTGTCAGTGCTGTTTTAGCCCACTTCTTATTGCAGGAGAGGCTGCAGAAAATGGGTGTTGTAGGGTGTTTATCCTGTATAGTAGGATCAGTTATAATAGTTATTCATGCACCTCAGGAACGTACTCCTGATTCTGTTGAAGAAATCTGGAATTTAGCAACTCAACCAGCTTTTCTAGTCTACCTTGCTGCTACAGCTTCGTTAGTGTTGGCTCTTATGTTGTATTTTGAACCTCGCTATGGACATGTAAATATATTAGTCTACTTGGGAATCTGTTCTTTAATGGGTTCATTGACGGTTATGAGTATTAAAGCTATTGGAATAGCGATAAGACTTACACTTGAAGGGGTAAGCCAAGTAGCTTACCCTCAAACTTGGCTTTTTGTTACAGTTGCAGTAGTATGTGTCGTCACACAACTTAATTACTTGAATAAGGACTGGTCAGGTCAGAACGTAAGCACTATAGTCTCTGAGTTATGTGGATTCATTACCGTCCTTTCTGGAACTATGATTCTCCACTCAACAAGAGAACAACAACCAGTCCCTTCACAAGGATCTGTAGCATGGTATATTAGTGGGGATTCAATGAAAGGTATTGAAGAACATTTGATCACCATAAGCAATTCACATTACACTGAAGAATGA 909 41.58 MTISENTKGLILAMASSAFIGSSFILKKKGLKRAGATGARAGVGGYTYLLEPLWWAGMVIMIIGEVANFVAYIYAPAVLVTPLGALSIIVSAVLAHFLLQERLQKMGVVGCLSCIVGSVIIVIHAPQERTPDSVEEIWNLATQPAFLVYLAATASLVLALMLYFEPRYGHVNILVYLGICSLMGSLTVMSIKAIGIAIRLTLEGVSQVAYPQTWLFVTVAVVCVVTQLNYLNKDWSGQNVSTIVSELCGFITVLSGTMILHSTREQQPVPSQGSVAWYISGDSMKGIEEHLITISNSHYTEE 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6190990 6195621 + Cp4.1LG04g05080.1 Cpe04g00579 468141

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00579 302 PANTHER MAGNESIUM TRANSPORTER NIPA6-RELATED 3 233 - -
Cpe04g00579 302 Pfam Magnesium transporter NIPA 6 233 IPR008521 GO:0015095|GO:0015693|GO:0016021
Cpe04g00579 302 PANTHER MAGNESIUM TRANSPORTER NIPA6-RELATED 233 301 - -
Cpe04g00579 302 PANTHER UNCHARACTERIZED 3 233 IPR008521 GO:0015095|GO:0015693|GO:0016021
Cpe04g00579 302 PANTHER UNCHARACTERIZED 233 301 IPR008521 GO:0015095|GO:0015693|GO:0016021
Cpe04g00579 302 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 124 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00579 K22733 NIPA, SLC57A2S; magnesium transporter - csv:101205979 512.301
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00579 Cpe15g00581 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00579 Cpe-Chr4:6190990 Cpe04g00901 Cpe-Chr4:8211737 2.04E-125 dispersed
Cpe06g00921 Cpe-Chr6:6603037 Cpe04g00579 Cpe-Chr4:6190990 2.78E-117 transposed
Cpe15g00581 Cpe-Chr15:6623131 Cpe04g00579 Cpe-Chr4:6190990 5.36E-117 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g119 . . . . . . . . Cmo19g00735 Cmo11g01727 . . . . Sed05g2232 Cpe04g00579 Cpe15g00581 Bhi05g01740 Tan02g0707 Cmetu01g1169 . Hepe02g0441 . . Cla02g00443 Cam02g0452 Cec02g0450 Cco02g0469 Clacu02g0453 Cmu02g0448 Cre02g0781 Cone12ag1216 Cone8ag1268 . . . Csa07g00083 . Cme01g01281 Blo04g00555 . . Bda14g00604 Bpe15g00826 . Bma03g00595 . . . . Cma11g01391 . . Car19g00555 . . . . . . . . . . . . . . . . Lsi11g01183 . Chy01g00695 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000928 3 9 3 2 2 2 4 2 2 2 2 2 3 2 2 4 2 3 3 2 2 2 2 2 2 2 2 6 7 3 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00579 Cpe_Chr04 FPKM 27.978479 32.932499 16.852217 17.728565 19.067209 17.880125 19.459187 11.39222 9.083471 10.262379