Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe04g00591 | ATGGACGACGGGGAGATTGATTTTTCGAATCAAGAAGTGTTTTCGAACCCTAATATGGCGATTCCAAGCAGTTGCTCAATGGATAGTTTCTTTGATGATCTTCTCAAAGACGTTCATACTTGTACTCATACTCATACTTGCATTCCACCGGGCCCTGATTACTCTCATACCCACACCTGTTTCCATGTCCACACTAAAATTCTCCCTGCCTCACCTGAAGAAGACAAGGTTGTTACTGATGATACTGCGGAATCGACTGAAAAGAAGTCGAAGAAACGCCCGTTGGGTAACCAGGAAGCTGTTCGTAAGTATCGTGAGAAGAAGAAGGCTAGGGCAGCCTCATTAGAGGATGAGGTTGTTAGATTGAGGGCTTTGAATCAGCATTTGATGAAGAGGTTGCAAGGGCAGGCAGCATTGGAGGCTGAGATTACTCGGCTCAAGTGTTTGCTTGTGGATATTAGGGGCAGAATTGAAGGGGAGATTGGTTCGTTTCCTTATCAGAAAACTGGTAATCCCAACCTGTCCAACACAAGCAACCCTGGTGCTTATGTGATGAACCCATGTAATATGCAGTGTGATGATCAGGTTTACTGCCTTCGTCCTGAGGGTAATGGAAGTAGAAGTGGTGAAGGTGCTGTGATAAATGGACAGAGTTTTGGTGCTTGTGGATTTGAAAATCTTCAGTGTTTGGTGAATCATGACTCGGGATCGAAAGAGCTACTCGGGGACGGGATGGGGAATGCTGTTTCAAATGATACTTCTTCTGGAGTGACAAAGAGAAAAGGTGAAAACTGA | 795 | 44.91 | MDDGEIDFSNQEVFSNPNMAIPSSCSMDSFFDDLLKDVHTCTHTHTCIPPGPDYSHTHTCFHVHTKILPASPEEDKVVTDDTAESTEKKSKKRPLGNQEAVRKYREKKKARAASLEDEVVRLRALNQHLMKRLQGQAALEAEITRLKCLLVDIRGRIEGEIGSFPYQKTGNPNLSNTSNPGAYVMNPCNMQCDDQVYCLRPEGNGSRSGEGAVINGQSFGACGFENLQCLVNHDSGSKELLGDGMGNAVSNDTSSGVTKRKGEN | 264 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 6254361 | 6255155 | + | Cp4.1LG04g05070.1 | Cpe04g00591 | 468153 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe04g00591 | 264 | Gene3D | - | 75 | 153 | - | - | |
| Cpe04g00591 | 264 | PANTHER | CCAAT/ENHANCER BINDING PROTEIN | 1 | 241 | - | - | |
| Cpe04g00591 | 264 | MobiDBLite | consensus disorder prediction | 240 | 264 | - | - | |
| Cpe04g00591 | 264 | Pfam | Basic region leucine zipper | 86 | 142 | IPR004827 | GO:0003700|GO:0006355 | |
| Cpe04g00591 | 264 | SMART | brlzneu | 85 | 152 | IPR004827 | GO:0003700|GO:0006355 | |
| Cpe04g00591 | 264 | SUPERFAMILY | Leucine zipper domain | 89 | 135 | IPR046347 | GO:0003700|GO:0006355 | |
| Cpe04g00591 | 264 | Coils | Coil | 105 | 132 | - | - | |
| Cpe04g00591 | 264 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 87 | 134 | IPR004827 | GO:0003700|GO:0006355 | |
| Cpe04g00591 | 264 | PANTHER | BASIC LEUCINE ZIPPER 23 | 1 | 241 | - | - | |
| Cpe04g00591 | 264 | CDD | bZIP | 91 | 143 | - | - | |
| Cpe04g00591 | 264 | MobiDBLite | consensus disorder prediction | 72 | 102 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe04g00591 | Cpe16g00318 | CCT | |
| Cpe04g00591 | Cpe05g01371 | CCT | |
| Cpe04g00591 | Cpe15g00593 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe15g00593 | Cpe-Chr15:6688098 | Cpe04g00591 | Cpe-Chr4:6254361 | 3.76E-163 | wgd | |
| Cpe16g00318 | Cpe-Chr16:5045606 | Cpe04g00591 | Cpe-Chr4:6254361 | 5.76E-123 | wgd | |
| Cpe04g00591 | Cpe-Chr4:6254361 | Cpe05g01371 | Cpe-Chr5:9639800 | 5.17E-129 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 49354 | PF07716 | bZIP_2 | 9.20E-13 | CL0018 | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe04g00591 | K25785 | - | csv:101208161 | 449.514 |