Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00592 ATGGCGGGAGAACAGAACGGCGGTGTCGATGAGGTGATGGAGGAATTCGCCATCTGGAAGAAGAATTCGCCCTATCTGTACGATCTTCTCATTTCCCACTCTCTTGAGTGGCCGTCTCTCACTGTTGATTGGGTGCCATTGGCTCCATTTCCTCACCCAGCCAATTCTTCTCTCGCTGTCCACAAGCTCGTTCTTGGAACTCACACTTCGGAGGAAGTCCCCAACTTTCTCATGGTGGCCGATGTAATTTTACCTGTCAAAGCATCCGAAACTAGAATCGACATTACTGGGGAAAACCCCATCATGCCGGAGGTAGAGATAACCCAGAAGATACGTGTTGATGGAGAGGTGAACAGAGCGCGATGTATGCCGCAGAACCCAGAAATTATTGGGGCAAAAACGAGTGGCTGTGAGGTGTATGTTTTTAATTGTGCTAAACAGGGGGCGAAGGCTCAGGGAGGTGAGTGCGATCCTGATTTGAGATTGAGGGGTCATGATAAAGAGGGTTATGGGTTGTCTTGGAGCCCGTTTAAGGAGGGTTACCTCTTAAGTGGCTCAAATGATCAGAAAATCTGTTTGTGGGACGTGTCTTCCATGGCTGACAAGAACGTTCTTGATGCAATGAACGTCTATGAGGCTCATGAAAGTGTGGTCGGTGATGTGTCATGGCATTTGAAGAATGAGAACTTGTTTGGATCTGTAGGCGATGATTGCTTGTTGGTGATATGGGATTTGCGCACAAATAAATCTGTGGATTCTGTTCGAGCTCACGAGGAGGAGGTGAACTATGTTTCTTTCAATCCATATAACGAATGGATTTTAGCAACAGCATCATCAGATACCACCGTGGGTCTATTCGATCTACGAAAGCTTGCTGAACCACTCCACGTTCTTAGCAGCCACACGTTGATGGTATGGGATCTCAACAACATGGGAAACGAGCAAGATGGGGATGCTGAAGATGGGCCTCCAGAGCTGCTGTTTTCACACGGAGGCCACAAGGCTAAAATCTCTGACTTCACCTGGAACGCCTACCAGCCTTGGGTTATAGCAAGCGTCGCTGAAGACAACTCTGTTCAGTTGCGCAACAATACACTTATTGATCGAGGTATGCACCACCCCGTAGGCATTGACTGGATGAAGACGTTTGATGTCTGA 1158 47.93 MAGEQNGGVDEVMEEFAIWKKNSPYLYDLLISHSLEWPSLTVDWVPLAPFPHPANSSLAVHKLVLGTHTSEEVPNFLMVADVILPVKASETRIDITGENPIMPEVEITQKIRVDGEVNRARCMPQNPEIIGAKTSGCEVYVFNCAKQGAKAQGGECDPDLRLRGHDKEGYGLSWSPFKEGYLLSGSNDQKICLWDVSSMADKNVLDAMNVYEAHESVVGDVSWHLKNENLFGSVGDDCLLVIWDLRTNKSVDSVRAHEEEVNYVSFNPYNEWILATASSDTTVGLFDLRKLAEPLHVLSSHTLMVWDLNNMGNEQDGDAEDGPPELLFSHGGHKAKISDFTWNAYQPWVIASVAEDNSVQLRNNTLIDRGMHHPVGIDWMKTFDV 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6256950 6260192 - Cp4.1LG04g04940.1 Cpe04g00592 468154

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00592 385 Pfam WD domain, G-beta repeat 251 287 IPR001680 GO:0005515
Cpe04g00592 385 SUPERFAMILY WD40 repeat-like 114 360 IPR036322 GO:0005515
Cpe04g00592 385 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 14 85 IPR022052 -
Cpe04g00592 385 PANTHER WD40 REPEAT FAMILY 4 302 - -
Cpe04g00592 385 ProSiteProfiles Trp-Asp (WD) repeats profile. 254 289 IPR001680 GO:0005515
Cpe04g00592 385 Gene3D - 4 365 IPR015943 GO:0005515
Cpe04g00592 385 ProSiteProfiles Trp-Asp (WD) repeats profile. 162 204 IPR001680 GO:0005515
Cpe04g00592 385 PANTHER WD40 REPEAT FAMILY 302 361 - -
Cpe04g00592 385 SMART WD40_4 155 195 IPR001680 GO:0005515
Cpe04g00592 385 SMART WD40_4 247 287 IPR001680 GO:0005515
Cpe04g00592 385 SMART WD40_4 204 244 IPR001680 GO:0005515
Cpe04g00592 385 SMART WD40_4 323 363 IPR001680 GO:0005515
Cpe04g00592 385 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI2-RELATED 302 361 - -
Cpe04g00592 385 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI2-RELATED 4 302 - -
Cpe04g00592 385 ProSiteProfiles Trp-Asp (WD) repeats profile. 211 253 IPR001680 GO:0005515
Cpe04g00592 385 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 162 198 - -
Cpe04g00592 385 ProSitePatterns Trp-Asp (WD) repeats signature. 182 196 IPR019775 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00592 K10752 RBBP4, HAT2, CAF1, MIS16; histone-binding protein RBBP4 - csv:101207920 670.618
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00592 Cpe-Chr4:6256950 Cpe15g00592 Cpe-Chr15:6688070 6.77E-09 dispersed
Cpe04g00592 Cpe-Chr4:6256950 Cpe08g00445 Cpe-Chr8:2865337 9.37E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g163 . . . . . . . . Cmo19g00748 Cmo11g01740 . . . . Sed06g0381 Cpe04g00592 . Bhi05g01715 Tan02g0682 Cmetu01g1199 . Hepe02g0425 . . Cla02g00427 Cam02g0436 Cec02g0434 Cco02g0452 Clacu02g0437 Cmu02g0432 Cre02g0766 Cone12ag1232 . . . . Csa07g00100 . Cme01g01262 Blo04g00567 . . . Bpe15g00813 . Bma03g00609 . . . . Cma11g01381 Cma19g00739 . Car19g00568 . . . . . . . . . . . . . . . . Lsi11g01200 . Chy01g00681 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010062 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00592 Cpe_Chr04 FPKM 25.271431 27.925945 13.565135 11.647417 7.09634 7.375376 6.558466 3.7391 3.370346 3.15246