Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00600 ATGCTATTTCTAACTATCTTCTGTCTTCTATCAATGAATGCAGGTGACATTAATCATAGTATTGTAATCATGCAAACCCTGATGGAGAGGCTAAGACCCCTTGTAGGTAGTAAAAGCTGGGACTATTGTGTTCTCTGGAAATTGAGCCAAGACCAGAGATGTATTGAATGGGTGGACTGCTGTTGTGCTGGGACTGAGAACAATCAAAATGGTGGAGAAGAACACGTCTTTCCATGTAGGGACACCTTAAGTCCACACCCACGAGCCAGTTCTTGCGATCTTCTTGCTCAGCTGCCATGTTCAGTGCCGCTGAATTCTGGGGTTTATATACAGACATTGTTATCAAATGAACCTAGATGGCTACTCTTCTCCAATGGCACGGATTCAACCGCACTGGAAGAAACAATGGGGACCAGGGTATTAATTCCATTTCCATTTGGATTAGTGGAGCTGTTCGTTGCTAAACATGCGTCTGAAGATCAGCACGTCATAGATTTTGTTACAACTCAATGCAGCATTTCGATTGAGCAGGGAGCTATTATTAATTCAAGCAATATGGATACAAGTTTCTCTGTTGATGTAAATGCAACCAACGAAATCCAATCAAAGCCATTTGTAGCAGATCAGAATGTTGTAATAGAGGATCCTGAAAATCAATTTGAGGCACCAGGTTCAACCGCACCAACATTAGAAAATGCCAATGTGGGTTATGAAATCTCATTAGACAGAATCCGCCTCTGTAGTTCTCCTATGAACTTCTTGCAACAGTTCAATTATAGCTCAGAAAACAGAAACAAGAACGAAATCTTCCATGAATGTTCACAGGATGCATTCCATACTGATAAGCAGGGAAACCCTTACAAGTTTTCAGCAGAAAATGAGTTCCAAGAGGTGGATATAATGCAGGGGTCCTTAATGAACAACACATCAAACATTCATATGCAGTTCAAGGAGAACACTGAATGTAAGGAGCAGCAAGGGGAAGAAAAGGACTTGGTCAAAAATGAAAATGGAAGGTCTGATTCAGTCTCTGATTGCAGCGATCAGATCGATGATGAAGATGATGCGGTTGCGAAGTACCGCCGGAGGACTGGGCAGGGTCCTCAATCAAAGAACCTTGTTGCTGAGAGGAAGAGAAGAAAGAAACTTAATGAGCGGCTGTATAACCTGCGAGCATTGGTTCCCAAAATTTCTAAGATGGACAAAGCCTCAATACTTGGTGATGCAATTGATTTTGTGAAGGAGTTGCAAAAGCAAGTCAAGGAACTCCAAGATGAACTGGAAGAACATTCAGATGATGAAAATGGTAAGATTGTAGTTACAGGAAACGATGGAAACAAAACTAGCCCGCAAGTGGAAGTGGCTCAGATTGACGGGAACGAGTTCTTCGTGAAGGTTTTTTGTGAGAACAAGCGAGGTGGGTTTATGAGGTTAATGGAGGCCTTAAACGCTCTTGGGTTGGAAGTCACAAATGCAAATGTGACCAGCTATAGAGGCCTCGTATCTAATGTTTTCAAAGTTGGGAAAAAGGACAGTGAATTGGTTCAAGCGGATGATGTAAGGGACTCCTTATTGGAGATAACAAAGTACCCATGCAGAGGGTGGTCTGAAATGGTTAAGCAACCAGAGTGCAGCGTAAGCCGCATGGACTACCAGACCCACCCCCATACCCACCAGCACCAGCACCAGATCCAGCATCCATTTCTAGACAAAGCTATCAATTCACGCCTCCACCTCCTTGATGATTAA 1749 43.0 MLFLTIFCLLSMNAGDINHSIVIMQTLMERLRPLVGSKSWDYCVLWKLSQDQRCIEWVDCCCAGTENNQNGGEEHVFPCRDTLSPHPRASSCDLLAQLPCSVPLNSGVYIQTLLSNEPRWLLFSNGTDSTALEETMGTRVLIPFPFGLVELFVAKHASEDQHVIDFVTTQCSISIEQGAIINSSNMDTSFSVDVNATNEIQSKPFVADQNVVIEDPENQFEAPGSTAPTLENANVGYEISLDRIRLCSSPMNFLQQFNYSSENRNKNEIFHECSQDAFHTDKQGNPYKFSAENEFQEVDIMQGSLMNNTSNIHMQFKENTECKEQQGEEKDLVKNENGRSDSVSDCSDQIDDEDDAVAKYRRRTGQGPQSKNLVAERKRRKKLNERLYNLRALVPKISKMDKASILGDAIDFVKELQKQVKELQDELEEHSDDENGKIVVTGNDGNKTSPQVEVAQIDGNEFFVKVFCENKRGGFMRLMEALNALGLEVTNANVTSYRGLVSNVFKVGKKDSELVQADDVRDSLLEITKYPCRGWSEMVKQPECSVSRMDYQTHPHTHQHQHQIQHPFLDKAINSRLHLLDD 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6299847 6302922 + Cp4.1LG04g04890.1 Cpe04g00600 468162

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00600 582 Pfam Helix-loop-helix DNA-binding domain 374 417 IPR011598 GO:0046983
Cpe04g00600 582 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 27 168 IPR025610 -
Cpe04g00600 582 CDD bHLH_AtAMS_like 370 438 - -
Cpe04g00600 582 Coils Coil 406 433 - -
Cpe04g00600 582 MobiDBLite consensus disorder prediction 321 352 - -
Cpe04g00600 582 CDD ACT_UUR-ACR-like 464 526 - -
Cpe04g00600 582 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 367 416 IPR011598 GO:0046983
Cpe04g00600 582 SMART finulus 373 422 IPR011598 GO:0046983
Cpe04g00600 582 MobiDBLite consensus disorder prediction 426 445 - -
Cpe04g00600 582 MobiDBLite consensus disorder prediction 321 338 - -
Cpe04g00600 582 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 369 430 IPR036638 GO:0046983
Cpe04g00600 582 PANTHER TRANSCRIPTION FACTOR ABORTED MICROSPORES 104 535 - -
Cpe04g00600 582 Gene3D - 360 433 IPR036638 GO:0046983
Cpe04g00600 582 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 104 535 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00600 - - - cmos:111435148 1073.15
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00600 Cpe15g00600 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01533 Cpe-Chr1:9174100 Cpe04g00600 Cpe-Chr4:6299847 7.00E-35 dispersed
Cpe04g00600 Cpe-Chr4:6299847 Cpe03g00658 Cpe-Chr3:3925974 1.43E-26 dispersed
Cpe11g00494 Cpe-Chr11:2865517 Cpe04g00600 Cpe-Chr4:6299847 4.82E-21 dispersed
Cpe15g00487 Cpe-Chr15:5851033 Cpe04g00600 Cpe-Chr4:6299847 2.21E-07 dispersed
Cpe19g00722 Cpe-Chr19:5635671 Cpe04g00600 Cpe-Chr4:6299847 3.54E-21 dispersed
Cpe07g01058 Cpe-Chr7:9446056 Cpe04g00600 Cpe-Chr4:6299847 1.49E-08 transposed
Cpe15g00600 Cpe-Chr15:6735586 Cpe04g00600 Cpe-Chr4:6299847 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g174 . . . . . . . . Cmo19g00756 Cmo11g01748 . . . . Sed05g2587 Cpe04g00600 Cpe15g00600 Bhi05g01697 Tan02g0669 Cmetu01g2019 . Hepe02g0417 . . Cla02g00417 Cam02g0427 Cec02g0425 Cco02g0443 Clacu02g0428 Cmu02g0423 Cre02g0757 . . . . . . . . Blo04g00576 . . Bda14g00621 Bpe15g00806 . Bma03g00615 . . . . Cma11g01372 Cma19g00746 . Car19g00575 . . . . . . . . . . . . . . . . Lsi11g01209 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006375 1 1 2 2 1 1 2 1 1 1 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49355 PF14215 bHLH-MYC_N 8.20E-18 CL0161 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00600 Cpe_Chr04 FPKM 1.625112 1.355324 6.056423 6.630586 4.358587 5.239299 5.706473 0.71788 0.626054 0.695504