Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00604 ATGTTATCGGAGTTGATGAACTTATTGAGGGCCTGTTTTGGGCCAAGCTCCGATCGGTCTGCAGCGGGCAATATCAGGGGGCGACAGGACGGGTTGTTGTGGTACAAAGATAGTGGACACCATTTGAATGGTGAGTACTCAATGTCTGTAGTTCAGGCCAACAATTTGCTTGAAGATCAGAGTCAGATTGAGTCAGGCAGTTTGAGCTCAGATGAGTCTGGTCCCTTTGGGACCTTTGTTGGTGTGTATGATGGCCATGGAGGCCCCGAGACGTCTCGGTATATCTGTGATCATCTCTTCCAGCATCTCAAGAGATTTACTTCCGAGCAAGATTCGATGTCTGCGGATGTAATACGCAAGGCATTCCAAGCGACTGAAGACGGTTTTCTTTCTATAGTCCGAAGACAATGGTCGACGAATCCACAAATTGCAGCTGTTGGTTCATGCTGTCTAGTTGGTGTAATATGTAATGGGACTCTCTATATTGCAAATCTAGGTGATTCTCGTGCCGTTTTGGGTAGAATGGTGAAGGCAACCGGTGATGTTATAGCCATTCAGTTATCGACGGAGCATAATGTTGCTAACGAGTCTGTGCGGCAAGAGCTGCAATCTTTGCACCCCGAAGACTCGCAAATTGTGGTTTTAAAGCATAATGTTTGGCGCGTAAAGGGCATAATACAGGTTAGTTAG 690 46.52 MLSELMNLLRACFGPSSDRSAAGNIRGRQDGLLWYKDSGHHLNGEYSMSVVQANNLLEDQSQIESGSLSSDESGPFGTFVGVYDGHGGPETSRYICDHLFQHLKRFTSEQDSMSADVIRKAFQATEDGFLSIVRRQWSTNPQIAAVGSCCLVGVICNGTLYIANLGDSRAVLGRMVKATGDVIAIQLSTEHNVANESVRQELQSLHPEDSQIVVLKHNVWRVKGIIQVS 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6319570 6321458 + Cp4.1LG04g04910.1 Cpe04g00604 468166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00604 229 CDD PP2Cc 46 229 IPR001932 -
Cpe04g00604 229 PANTHER ALPHABET, ISOFORM E-RELATED 6 229 - -
Cpe04g00604 229 ProSitePatterns PPM-type phosphatase domain signature. 79 87 IPR000222 GO:0043169
Cpe04g00604 229 ProSiteProfiles PPM-type phosphatase domain profile. 45 229 IPR001932 -
Cpe04g00604 229 Gene3D - 33 229 IPR036457 -
Cpe04g00604 229 SUPERFAMILY PP2C-like 48 229 IPR036457 -
Cpe04g00604 229 SMART PP2C_4 37 229 IPR001932 -
Cpe04g00604 229 PANTHER PROTEIN PHOSPHATASE 2C 60-RELATED 6 229 - -
Cpe04g00604 229 Pfam Protein phosphatase 2C 77 229 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00604 Cpe16g00325 CCT
Cpe04g00604 Cpe05g01363 CCT
Cpe04g00604 Cpe15g00605 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00317 Cpe-Chr4:3923949 Cpe04g00604 Cpe-Chr4:6319570 1.44E-75 dispersed
Cpe04g00604 Cpe-Chr4:6319570 Cpe19g00880 Cpe-Chr19:6451702 1.90E-130 dispersed
Cpe14g01040 Cpe-Chr14:8734462 Cpe04g00604 Cpe-Chr4:6319570 2.57E-120 wgd
Cpe15g00605 Cpe-Chr15:6773776 Cpe04g00604 Cpe-Chr4:6319570 5.40E-157 wgd
Cpe16g00325 Cpe-Chr16:5096653 Cpe04g00604 Cpe-Chr4:6319570 1.82E-110 wgd
Cpe04g00604 Cpe-Chr4:6319570 Cpe05g01363 Cpe-Chr5:9586872 7.45E-134 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00604 - K01102 csv:101211601 412.149