Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00605 AATAACATTTGTAGTCCATCAGATCCCAGTTTACATCTTCTTGCTGCTGTCCTCATTTCTCCTCGCCCTCGGTTCCGCTATCAGATCAGGAGAGCGAAAGCAACAGTGTTTGAAGTATGGGGATGGAACAAAACAATCACGATTCAGAGGAGGGGACTCTGGAGATTGGCATGGGTAGAATATAGAACAGTCTCTGGTGTTGCTGGTCCATTGGTTATTCTGGACAAAGTCAAGGGACCTAAGTTTCAGGAGATTGTTAATATTCGTCTAGGAGATGGATCAACCAGGCGTGGTCAAGTCCTGGAAGTTGATGGAGAGAAAGCTGTTGTCCAGGTTTTTGAAGGGACATCTGGAATTGATAACAAATATACAACTGTGCAATTTACCGGAGAGGTTTTGAAAACTCCAGTTTCCTTGGACATGCTTGGGCGAATTTTTAATGGTTCTGGAAAACCCATTGATAACGGTCCTCCTATCCTGCCCGAGGCTTACTTGGATATTTCTGGGAGTTCTATAAACCCTAGTGAAAGAACTTATCCCGAAGAGATGATACAGACTGGGATTTCTACAATTGATGTCATGAATTCCATTGCTAGAGGACAAAAGATCCCACTTTTCTCAGCTGCAGGTCTTCCTCACAATGAAATTGCTGCCCAGATTTGTCGTCAGGCTGGCTTGGTAAAGCGGTTGGAGAAATCTAAAGATCTTCTTGAGGGTGGTGAAGAGGACAACTTTGCCATTGTTTTTGCCGCTATGGGTGTTAACATGGAGACTGCTCAATTTTTTAAACGTGATTTTGAGGAAAATGGTTCAATGGAGAGAGTGACCCTATTTCTGAACCTGGCTAATGATCCTACAATTGAGCGTATTATCACTCCTCGTATTGCTCTTACCACTGCTGAATATTTGGCTTATGAATGTGGGAAGCATGTTCTCGTCATACTGACAGATATGAGTTCTTATGCTGATGCCCTTCGAGAGGTGTCTGCTGCACGAGAGGAAGTGCCTGGAAGGCGTGGATACCCTGATATTACACATCCTACTCCCGATCTTACTGGCTATATTACTGAGGGACAGATTTACATCGATAGGCAGCTCTATAACAGACAGATATACCCACCAATTAATGTCCTTCCTTCATTGTCTCGTCTTATGAAGAGTGCTATTGGTGAGGGAATGACCCGTAGGGATCATGCTGATGTATCCAACCAGCTCTATGCAAATTATGCAATTGGAAAGGATGTTCAGGCAATGAAAGCCGTGGTCGGAGAAGAAGCACTCTCTTCTGAGGATCTGCTCTATTTAGAGTTTTTGGACAAATTTGAGAGGAAGTTTGTCAGTCAAGGAGCTTACGACACTCGAAACATTTTCCAATCGCTCGATCTGGCATGGACACTGCTTCGTATTTTCCCTCGTGAACTTCTCCACCGTATACCTGCAAAGACTCTTGATCTGTTTTACAGCCGAGAATCTGCAAATTGA 1482 43.79 NNICSPSDPSLHLLAAVLISPRPRFRYQIRRAKATVFEVWGWNKTITIQRRGLWRLAWVEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSKDLLEGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVSQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDLFYSRESAN 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6326037 6331251 + Cp4.1LG04g04880.1 Cpe04g00605 468167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00605 493 CDD ATP-synt_V_A-type_beta_N 60 131 - -
Cpe04g00605 493 PANTHER V-TYPE PROTON ATPASE SUBUNIT B1-RELATED 343 493 - -
Cpe04g00605 493 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 187 342 IPR000194 GO:0005524
Cpe04g00605 493 Gene3D - 343 493 - -
Cpe04g00605 493 Gene3D - 69 342 - -
Cpe04g00605 493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 388 IPR027417 -
Cpe04g00605 493 Hamap V-type ATP synthase beta chain [atpB]. 58 491 IPR022879 -
Cpe04g00605 493 Pfam ATP synthase alpha/beta family, beta-barrel domain 64 130 IPR004100 GO:0046034|GO:1902600
Cpe04g00605 493 ProSitePatterns ATP synthase alpha and beta subunits signature. 373 382 IPR020003 GO:0005524
Cpe04g00605 493 CDD V_A-ATPase_B 132 384 - -
Cpe04g00605 493 CDD ATP-synt_V_A-type_beta_C 392 486 - -
Cpe04g00605 493 PANTHER V-TYPE PROTON ATPASE SUBUNIT B1-RELATED 59 343 - -
Cpe04g00605 493 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 343 382 IPR000194 GO:0005524
Cpe04g00605 493 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 343 493 IPR022879 -
Cpe04g00605 493 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 59 343 IPR022879 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00605 Cpe15g00607 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00605 Cpe-Chr4:6326037 Cpe17g00407 Cpe-Chr17:3036883 4.75E-08 dispersed
Cpe15g00607 Cpe-Chr15:6781831 Cpe04g00605 Cpe-Chr4:6326037 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00605 K02147 - csv:101211838 834.713