Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00610 ATGGATTCCTTCAAGAAATCTCTCAAACCCAATGGACCTTTCAAGCATTCCAGGAAGATTTCTGCCGGCGGAGCTGGAAGCGAAATCAATCAGGAGGAGCTCCCCATTCTTCTCGATCACCAACCTTCTGATCAGCATAATCGCCATAAGGTTCGTCGACCAGCCAACGACGGCGAACCTTCTGGACACAATGAGGTCATTCTCAAGGTCGATGATGGCGGTTCTTCGGCTGTCTCAAGATCGCAGGAGTCTGCCGGCTATGGCGGGAAGGTTTGGCGGGAATCTAGGTATGACTTCTGGAGTAATAATGATGGAATTGGAACTGGAGGTAGTGCGAGTTGGGCTAGTGGTGCGAGAGCGAGTGATAGTGGTGATAGAAATGAGGGATTTGAATTTGTGAGGCGTGGGAATGGTACGGATGATCCGCCGACGAAGCTGATTGGTGATTTTCTTCATAAGCAGAAAGTTAGAGGCGAAACGACTTTGGATTTGGATCTGGAAATGGAGGAGTTGCGGCTTGATAGGACTAAAACTCCGATGATGGACTCGCCGTTGAGTCGGGCTTCGAAGGATCTTAAAGTTTCGTTTCAACATGACTCGACTGAAATATCGAGCAATGAATCGGTTCGACGGCGGTATAAAGAGTTCCGTGAAATGCAAGAAGAGAGCAAAAGAGGTCAGCCGTCATGGCATCAATCGCACCATGAACATGGCGGATCTTCCATCTCTGGTGTTCAGAACGACTCTGTTGCTGAAGCTATGAGAAGCGCATCTAACTTGTCTTTTCAGAGCACTCTTTCGTTGCATAGGAAATCTCATTTGCTGAAGGCTAAAGGCAAGTCGAGATTGACAGATCCGCCGGCAGAACCAGACCGTCTCTCCGGCCTCGTTAACAAATCGGGACAGCTCCGATCAGGGTTTCTCGGCAGGACTGACGATGAGGAGGACGACCCTTTTCTGGAGGAGGATTTTCCAGACGATTTCAGAAGGGGTAAGCTCGATGCTCTAACTGTGCTTCAATGGATCAGTTTGTTTCTAATCACTGCTGCTTTAGTTTGCACACTTTCTATTCGCCATTTGAGAGAAAATAGCTTATGGGAATTTAGTATATGGAAATGGGAGGTGATGGTTTTGGTACTGATTTGTGGGCGATTGGTATCTGGTTGGGGGATTGGAATTGGAGTATTTTTCATTGAGAGGAATTTTCTTTTGCGTAAGAAGGTTCTGTATTTCGTTTATGGGATTAAGAGGCCAGTGCAGAATTGTCTATGGTTAGGCCTTGTTCTAATCGCTTGGCATTTGTTGTTTGATAAGCGAGTTAAGAATCAAACCAACAGCGATATACTCGATTACGTGAGGAAAAGTTTAGTGTGTCTCTTGTTAAGCACATTGATTTGGCTAGCTAAGACCCTGATGCTGAAGGTGCTTGCATCTTCCTTCCATGTGAGCACATACTTCGATCGAATTCAGGAATCGTTGTTTAACCAATATGTAATCGAGACGCTTTCGGGGCCACCACGGATTGAGCTTCAGAAGAGTGAGGAAGAACAGAAGAAAATTGCAGATGAAGTTCAAAGACTACAGAGTGCAGGAGTTCCCGTACCCCCTGATCTAAGGGCAGCAGCTTTATCTTCTATAAAGAGTGGTGAAAGGGTAAGAAGCAATGTGGCGAGCCAGAGAAGTTTGCGTGGAAAAGATCCCAAACTCTCAAGGGTATCTACCAAAAATGGAAGTGAAGGGATAAATATTGACCACTTGCACAAGCTAACTTCGAAGAATGTATCTGCTTGGAATATGAAGAGGTTGCTGAAAATAGTTAGATATGGAAGTATTACCACACTGGATGAGCAGATACAGGGGCCGTCTCTTGATGATGAATCTACTACTACCGAGATCAAAAGTGAACGCGAGGCAAAGGCTGCTGCTAAGAAGATTTTTCAGAACGTGGCTCGGCCCGGGTTCAATCGCTTTGAGGGAGCAACTGAGACCCGGAGGATAAGCAAGTCTGCCTTGAAAAATTGGGTGGTCAATGCCTTCAGAGAACGTAGAGCCCTTTCTTTAACACTGAATGATACCAAAACAGCTGTTGAGAGACTTGGCCTTGTGGTGAATGTCATATTCAGCATCTTTATAATAGTTTTATGGATTATATTACTAGGAATTGCCTCCAGAAAAGTCATCCTCTACATTAGTTCTCAAATAGTGCTTGTGGCATTCATTTTTGGGAACACTCTAAAGAACATATTTGAAGCAATCATCTTCTTGTTTGTCATGCATCCGTTCGACGTCGGAGATCGATGTGAAATCGATGATATTCAGATGGTTGTAGAGGAAATGAACATCTTGACTACTGTGTTCTTGAGACACGACAACCTGAAGATTATTGTCCCAAATAGTGTTCTTGCAACCAAAGTGATCCACAACCACTACCGTAGTCCCGACATGGGCGAATTTATTGAAATCTGTGTCCATATAATGACGCCACTTGAGAAAATTACGGCCATGAAACAGAGAATCATAAGTTACATTGAATCCGACAAAGAACACTGGTGTCCTTCCCCAATTATTTTGATGAAGGATATAGATAGTGCAGACAAATTGGCCATGTCAATTTGGCTGTCACACACAATGAACCACCAAGACATAAGGGAAAGATGGGCCCGGAGATCCGTCGTGGTCGAAGAGGTATTGAAGATCTGTCAAGAGTTCGACATTACACCGTCTCTCGTCCCGCCACCGTGA 2742 44.86 MDSFKKSLKPNGPFKHSRKISAGGAGSEINQEELPILLDHQPSDQHNRHKVRRPANDGEPSGHNEVILKVDDGGSSAVSRSQESAGYGGKVWRESRYDFWSNNDGIGTGGSASWASGARASDSGDRNEGFEFVRRGNGTDDPPTKLIGDFLHKQKVRGETTLDLDLEMEELRLDRTKTPMMDSPLSRASKDLKVSFQHDSTEISSNESVRRRYKEFREMQEESKRGQPSWHQSHHEHGGSSISGVQNDSVAEAMRSASNLSFQSTLSLHRKSHLLKAKGKSRLTDPPAEPDRLSGLVNKSGQLRSGFLGRTDDEEDDPFLEEDFPDDFRRGKLDALTVLQWISLFLITAALVCTLSIRHLRENSLWEFSIWKWEVMVLVLICGRLVSGWGIGIGVFFIERNFLLRKKVLYFVYGIKRPVQNCLWLGLVLIAWHLLFDKRVKNQTNSDILDYVRKSLVCLLLSTLIWLAKTLMLKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPRIELQKSEEEQKKIADEVQRLQSAGVPVPPDLRAAALSSIKSGERVRSNVASQRSLRGKDPKLSRVSTKNGSEGINIDHLHKLTSKNVSAWNMKRLLKIVRYGSITTLDEQIQGPSLDDESTTTEIKSEREAKAAAKKIFQNVARPGFNRFEGATETRRISKSALKNWVVNAFRERRALSLTLNDTKTAVERLGLVVNVIFSIFIIVLWIILLGIASRKVILYISSQIVLVAFIFGNTLKNIFEAIIFLFVMHPFDVGDRCEIDDIQMVVEEMNILTTVFLRHDNLKIIVPNSVLATKVIHNHYRSPDMGEFIEICVHIMTPLEKITAMKQRIISYIESDKEHWCPSPIILMKDIDSADKLAMSIWLSHTMNHQDIRERWARRSVVVEEVLKICQEFDITPSLVPPP 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6360754 6365076 - Cp4.1LG04g04760.1 Cpe04g00610 468172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00610 913 MobiDBLite consensus disorder prediction 554 577 - -
Cpe04g00610 913 Pfam Mechanosensitive ion channel 703 905 IPR006685 GO:0016020|GO:0055085
Cpe04g00610 913 MobiDBLite consensus disorder prediction 42 59 - -
Cpe04g00610 913 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 110 911 IPR016688 -
Cpe04g00610 913 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 2 100 IPR016688 -
Cpe04g00610 913 MobiDBLite consensus disorder prediction 277 297 - -
Cpe04g00610 913 MobiDBLite consensus disorder prediction 1 87 - -
Cpe04g00610 913 SUPERFAMILY Sm-like ribonucleoproteins 749 809 IPR010920 -
Cpe04g00610 913 Coils Coil 510 530 - -
Cpe04g00610 913 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2 100 - -
Cpe04g00610 913 Gene3D - 760 809 IPR023408 -
Cpe04g00610 913 MobiDBLite consensus disorder prediction 196 244 - -
Cpe04g00610 913 MobiDBLite consensus disorder prediction 110 144 - -
Cpe04g00610 913 MobiDBLite consensus disorder prediction 204 232 - -
Cpe04g00610 913 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 110 911 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00610 Cpe-Chr4:6360754 Cpe06g00045 Cpe-Chr6:232841 0 dispersed
Cpe16g00335 Cpe-Chr16:5154578 Cpe04g00610 Cpe-Chr4:6360754 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00610 K22048 - csv:101207426 1224.15