Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00610 ATGGATTCCTTCAAGAAATCTCTCAAACCCAATGGACCTTTCAAGCATTCCAGGAAGATTTCTGCCGGCGGAGCTGGAAGCGAAATCAATCAGGAGGAGCTCCCCATTCTTCTCGATCACCAACCTTCTGATCAGCATAATCGCCATAAGGTTCGTCGACCAGCCAACGACGGCGAACCTTCTGGACACAATGAGGTCATTCTCAAGGTCGATGATGGCGGTTCTTCGGCTGTCTCAAGATCGCAGGAGTCTGCCGGCTATGGCGGGAAGGTTTGGCGGGAATCTAGGTATGACTTCTGGAGTAATAATGATGGAATTGGAACTGGAGGTAGTGCGAGTTGGGCTAGTGGTGCGAGAGCGAGTGATAGTGGTGATAGAAATGAGGGATTTGAATTTGTGAGGCGTGGGAATGGTACGGATGATCCGCCGACGAAGCTGATTGGTGATTTTCTTCATAAGCAGAAAGTTAGAGGCGAAACGACTTTGGATTTGGATCTGGAAATGGAGGAGTTGCGGCTTGATAGGACTAAAACTCCGATGATGGACTCGCCGTTGAGTCGGGCTTCGAAGGATCTTAAAGTTTCGTTTCAACATGACTCGACTGAAATATCGAGCAATGAATCGGTTCGACGGCGGTATAAAGAGTTCCGTGAAATGCAAGAAGAGAGCAAAAGAGGTCAGCCGTCATGGCATCAATCGCACCATGAACATGGCGGATCTTCCATCTCTGGTGTTCAGAACGACTCTGTTGCTGAAGCTATGAGAAGCGCATCTAACTTGTCTTTTCAGAGCACTCTTTCGTTGCATAGGAAATCTCATTTGCTGAAGGCTAAAGGCAAGTCGAGATTGACAGATCCGCCGGCAGAACCAGACCGTCTCTCCGGCCTCGTTAACAAATCGGGACAGCTCCGATCAGGGTTTCTCGGCAGGACTGACGATGAGGAGGACGACCCTTTTCTGGAGGAGGATTTTCCAGACGATTTCAGAAGGGGTAAGCTCGATGCTCTAACTGTGCTTCAATGGATCAGTTTGTTTCTAATCACTGCTGCTTTAGTTTGCACACTTTCTATTCGCCATTTGAGAGAAAATAGCTTATGGGAATTTAGTATATGGAAATGGGAGGTGATGGTTTTGGTACTGATTTGTGGGCGATTGGTATCTGGTTGGGGGATTGGAATTGGAGTATTTTTCATTGAGAGGAATTTTCTTTTGCGTAAGAAGGTTCTGTATTTCGTTTATGGGATTAAGAGGCCAGTGCAGAATTGTCTATGGTTAGGCCTTGTTCTAATCGCTTGGCATTTGTTGTTTGATAAGCGAGTTAAGAATCAAACCAACAGCGATATACTCGATTACGTGAGGAAAAGTTTAGTGTGTCTCTTGTTAAGCACATTGATTTGGCTAGCTAAGACCCTGATGCTGAAGGTGCTTGCATCTTCCTTCCATGTGAGCACATACTTCGATCGAATTCAGGAATCGTTGTTTAACCAATATGTAATCGAGACGCTTTCGGGGCCACCACGGATTGAGCTTCAGAAGAGTGAGGAAGAACAGAAGAAAATTGCAGATGAAGTTCAAAGACTACAGAGTGCAGGAGTTCCCGTACCCCCTGATCTAAGGGCAGCAGCTTTATCTTCTATAAAGAGTGGTGAAAGGGTAAGAAGCAATGTGGCGAGCCAGAGAAGTTTGCGTGGAAAAGATCCCAAACTCTCAAGGGTATCTACCAAAAATGGAAGTGAAGGGATAAATATTGACCACTTGCACAAGCTAACTTCGAAGAATGTATCTGCTTGGAATATGAAGAGGTTGCTGAAAATAGTTAGATATGGAAGTATTACCACACTGGATGAGCAGATACAGGGGCCGTCTCTTGATGATGAATCTACTACTACCGAGATCAAAAGTGAACGCGAGGCAAAGGCTGCTGCTAAGAAGATTTTTCAGAACGTGGCTCGGCCCGGGTTCAATCGCTTTGAGGGAGCAACTGAGACCCGGAGGATAAGCAAGTCTGCCTTGAAAAATTGGGTGGTCAATGCCTTCAGAGAACGTAGAGCCCTTTCTTTAACACTGAATGATACCAAAACAGCTGTTGAGAGACTTGGCCTTGTGGTGAATGTCATATTCAGCATCTTTATAATAGTTTTATGGATTATATTACTAGGAATTGCCTCCAGAAAAGTCATCCTCTACATTAGTTCTCAAATAGTGCTTGTGGCATTCATTTTTGGGAACACTCTAAAGAACATATTTGAAGCAATCATCTTCTTGTTTGTCATGCATCCGTTCGACGTCGGAGATCGATGTGAAATCGATGATATTCAGATGGTTGTAGAGGAAATGAACATCTTGACTACTGTGTTCTTGAGACACGACAACCTGAAGATTATTGTCCCAAATAGTGTTCTTGCAACCAAAGTGATCCACAACCACTACCGTAGTCCCGACATGGGCGAATTTATTGAAATCTGTGTCCATATAATGACGCCACTTGAGAAAATTACGGCCATGAAACAGAGAATCATAAGTTACATTGAATCCGACAAAGAACACTGGTGTCCTTCCCCAATTATTTTGATGAAGGATATAGATAGTGCAGACAAATTGGCCATGTCAATTTGGCTGTCACACACAATGAACCACCAAGACATAAGGGAAAGATGGGCCCGGAGATCCGTCGTGGTCGAAGAGGTATTGAAGATCTGTCAAGAGTTCGACATTACACCGTCTCTCGTCCCGCCACCGTGA 2742 44.86 MDSFKKSLKPNGPFKHSRKISAGGAGSEINQEELPILLDHQPSDQHNRHKVRRPANDGEPSGHNEVILKVDDGGSSAVSRSQESAGYGGKVWRESRYDFWSNNDGIGTGGSASWASGARASDSGDRNEGFEFVRRGNGTDDPPTKLIGDFLHKQKVRGETTLDLDLEMEELRLDRTKTPMMDSPLSRASKDLKVSFQHDSTEISSNESVRRRYKEFREMQEESKRGQPSWHQSHHEHGGSSISGVQNDSVAEAMRSASNLSFQSTLSLHRKSHLLKAKGKSRLTDPPAEPDRLSGLVNKSGQLRSGFLGRTDDEEDDPFLEEDFPDDFRRGKLDALTVLQWISLFLITAALVCTLSIRHLRENSLWEFSIWKWEVMVLVLICGRLVSGWGIGIGVFFIERNFLLRKKVLYFVYGIKRPVQNCLWLGLVLIAWHLLFDKRVKNQTNSDILDYVRKSLVCLLLSTLIWLAKTLMLKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPRIELQKSEEEQKKIADEVQRLQSAGVPVPPDLRAAALSSIKSGERVRSNVASQRSLRGKDPKLSRVSTKNGSEGINIDHLHKLTSKNVSAWNMKRLLKIVRYGSITTLDEQIQGPSLDDESTTTEIKSEREAKAAAKKIFQNVARPGFNRFEGATETRRISKSALKNWVVNAFRERRALSLTLNDTKTAVERLGLVVNVIFSIFIIVLWIILLGIASRKVILYISSQIVLVAFIFGNTLKNIFEAIIFLFVMHPFDVGDRCEIDDIQMVVEEMNILTTVFLRHDNLKIIVPNSVLATKVIHNHYRSPDMGEFIEICVHIMTPLEKITAMKQRIISYIESDKEHWCPSPIILMKDIDSADKLAMSIWLSHTMNHQDIRERWARRSVVVEEVLKICQEFDITPSLVPPP 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6360754 6365076 - Cp4.1LG04g04760.1 Cpe04g00610 468172

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00610 913 MobiDBLite consensus disorder prediction 554 577 - -
Cpe04g00610 913 Pfam Mechanosensitive ion channel 703 905 IPR006685 GO:0016020|GO:0055085
Cpe04g00610 913 MobiDBLite consensus disorder prediction 42 59 - -
Cpe04g00610 913 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 110 911 IPR016688 -
Cpe04g00610 913 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 2 100 IPR016688 -
Cpe04g00610 913 MobiDBLite consensus disorder prediction 277 297 - -
Cpe04g00610 913 MobiDBLite consensus disorder prediction 1 87 - -
Cpe04g00610 913 SUPERFAMILY Sm-like ribonucleoproteins 749 809 IPR010920 -
Cpe04g00610 913 Coils Coil 510 530 - -
Cpe04g00610 913 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2 100 - -
Cpe04g00610 913 Gene3D - 760 809 IPR023408 -
Cpe04g00610 913 MobiDBLite consensus disorder prediction 196 244 - -
Cpe04g00610 913 MobiDBLite consensus disorder prediction 110 144 - -
Cpe04g00610 913 MobiDBLite consensus disorder prediction 204 232 - -
Cpe04g00610 913 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 110 911 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00610 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101207426 1224.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00610 Cpe-Chr4:6360754 Cpe06g00045 Cpe-Chr6:232841 0 dispersed
Cpe16g00335 Cpe-Chr16:5154578 Cpe04g00610 Cpe-Chr4:6360754 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g220 . . . . . . . . . . . Cma20g00732 . Car20g00632 . Cpe04g00610 . Bhi05g01668 . . . Hepe02g0399 . . . . . . . . . . Cone8ag1305 . . Lsi10g00812 Csa07g00130 . . Blo04g00586 . . Bda14g00631 . . Bma03g00619 . . . Cmo20g00729 . . Car11g01388 . . . . . . . . . . Cla02g01085 Cam02g1162 Cec02g1160 Cco02g1208 Clacu02g1153 Cmu02g1115 Cre02g1419 Lsi11g01224 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe07g00725 . 149 501 Mechanosensitive Ion Channel Family AT4G00290 63.0 5.1e-133 471.9
Cpe14g00646 . 64 727 Mechanosensitive Ion Channel Family AT5G10490 59.8 4.0e-197 685.3
Cpe11g00479 . 10 701 Mechanosensitive Ion Channel Family AT5G10490 55.4 8.9e-189 657.5
Cpe07g00169 . 61 698 Mechanosensitive Ion Channel Family AT5G10490 52.9 1.8e-173 606.7
Cpe11g00479 . 10 681 Mechanosensitive Ion Channel Family AT1G58200 57.0 1.6e-198 689.9
Cpe14g00646 . 6 696 Mechanosensitive Ion Channel Family AT1G58200 52.2 1.2e-177 620.5
Cpe07g00169 . 10 514 Mechanosensitive Ion Channel Family AT1G58200 59.8 1.4e-170 597.0
Cpe16g00335 . 50 938 Mechanosensitive Ion Channel Family AT1G53470 56.0 1.1e-263 906.7
Cpe16g00335 . 50 933 Mechanosensitive Ion Channel Family AT3G14810 52.5 1.5e-246 849.7
Cpe16g00335 . 50 938 Mechanosensitive Ion Channel Family AT1G78610 58.7 9.3e-284 973.4
Cpe04g00610 . 65 911 Mechanosensitive Ion Channel Family AT1G78610 51.3 1.5e-225 780.0
Cpe16g00335 . 229 933 Mechanosensitive Ion Channel Family AT2G17000 59.6 1.1e-233 807.0
Cpe04g00610 . 270 905 Mechanosensitive Ion Channel Family AT2G17000 56.0 2.0e-193 673.3
Cpe02g00286 . 69 720 Mechanosensitive Ion Channel Family AT5G19520 50.7 1.4e-174 610.5
Cpe18g00332 . 58 753 Mechanosensitive Ion Channel Family AT5G12080 54.2 3.1e-203 705.7
Cpe02g00286 . 64 720 Mechanosensitive Ion Channel Family AT5G12080 54.3 3.7e-188 655.6
Cpe04g01033 . 104 797 Mechanosensitive Ion Channel Family AT5G12080 51.0 4.2e-184 642.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00610 Cpe_Chr04 FPKM 6.542531 7.815343 3.530113 4.651186 9.066448 8.121426 8.762498 0.84411 0.863228 1.012975