Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00612 ATGGCGGACGAGAATGGCAGCGTGGAAAGCCTCGATCGCCTTCCTTCTGCTGTCCTTGCTACCATCATGACCAAGCTCGATTTGCCTTCTATCTGCTCCATTGCTTCCACCTGCACGACCTTCCATTCCTGTGCTTCTCAACTTCTCAATTTTCTCCCTAATTTCCATCTCCTTGAAATTTCTCCAACGGTGGAATTTCTGAGGCCTCTGCTGCCTCCAAATCCTTTCCTAAGGAGCTTAAAGGTAGATTGTGGTCAGCTTGATGATTCAGCTATCCAGCTTCTGCTGAAGCCTTCCTTGCACGAACTATATCTGCATAATTGCGCTGATTTCAGTGGTAAATTGCTGTCTGAGATCGGAGGGTGCTGCAAGGATTTAAGGTCCCTCTATTTGAGTTCAGTTGCTGAAAAAAGAGGTCGGGCAATTCATATTGCGGATCTAGAAGAGTTACTAAGTGGTTGCACACGGTTGGAAGCATTAACCCTGATGTTTGATGTCTCATTTTTCCTTCGTCAAAATTTTGCTCGAGTCTCGGCTATGGCTTCCGAAAAATTAACTTCTCTCGAGATTGGCTGTATCTATTCGGTTACAATCACCGAACTGCTTAGCCAAAATCTGGGTATCAGTAATTCTATGAATCATGTTGGCCCATCCATGTGGCCTAACATTGAAAAATTGTGTCTTTCAGTGGACTACATAACCGATGCCATGGTTGGTGCAATATCAAAAGGCCTTGTCTCCTTGACTCATTTGGAACTACAAGATGCTCCAATCATTGAACCAAGATTTTCTTTTGACCTGACCAACGTTGGCCTTCAACAAATCAAACATCTTTCAAAATTGAAGCATCTCTCTTTGGTACGAAGTCAGGAATTTTTCGTAACTTATTTTAGAAGAGTAAATGATTTGGGGATCCTCTTAATGGCTGATGGATGCGCTGACCTGGAAAGTATCTGTCTCGGAGGCTTTTGTCGTGTTACAGACACCGGGTTCAGGACACTTCTGCACACATTCTCCAATTTAAACAAGCTTAGGGTGTTCCATGGAATCCAATTAACCCATCTAGTTTTTCACGACATCTCTGCTACTTCACTTTCCTTGAAGCATGTTAGCTTGAGATGGTGCAGTCTCCTAACGAACGATGCCGTAAAGAACTTGTCGTTGAACAAGGATCTAAGTTTTCTTGACTTGAGAGATTGCAGAAGCCTTCGGGATGAAGCGCTTCAAGCTATCAGTACTATTCCAAAACTGAAGACGTTGCTTTTGGACGGGTCCGATATTAGTGATGCGGGATTGTCTCACTTAAGACCCATGATTATGAACTCGTTAGTTTCCTTGTCTGTTAGAGGTTGCAAGAAGCTTACAGATAAATCCATCACTGTTCTATTTGATGGCTTATCCAAAATAGAACTGCAAGAATTAGATCTATCCAACCTTCCTTATCTGTCTGATGCTGCAGTTTTACAACTGACCAGAAGCAGGTTTGCGATATCCGAACTCCGAATGCGTCAATGCCCTCTCATCGGCGATATCTCGGTCATGGCATTAGCCTCGATGCAAGTTAATGAAGACCAACGACATGGTAGTAGCCTCCGGTTGTTGGATTTGTACAACTGTGGTGGCCTTACACAGCTCTCATTCAAATGGTTAAAAAACCCATACTTTCCCAGGTTGAGGTGGTTGGGTGTTACAGGTAGTCTAAATCGCGACTTGGTTGATGCGTTAGCCAGAAGTAGACCGTTCTTGCACGTAGCATGCCATGGCGAGGAGTTGGGAGCCGATCATTGGGATAACTCCGACATTCTCTATATGCACCACTACGACGAGGTGGATGAATTCGAACAGTGGCTCTTTGATGGTGAGGTCGAGGACGACGAGGACGACGACATGGCCGATGCTGAAAATGATGGAGAGCTAATCCTATGA 1926 44.44 MADENGSVESLDRLPSAVLATIMTKLDLPSICSIASTCTTFHSCASQLLNFLPNFHLLEISPTVEFLRPLLPPNPFLRSLKVDCGQLDDSAIQLLLKPSLHELYLHNCADFSGKLLSEIGGCCKDLRSLYLSSVAEKRGRAIHIADLEELLSGCTRLEALTLMFDVSFFLRQNFARVSAMASEKLTSLEIGCIYSVTITELLSQNLGISNSMNHVGPSMWPNIEKLCLSVDYITDAMVGAISKGLVSLTHLELQDAPIIEPRFSFDLTNVGLQQIKHLSKLKHLSLVRSQEFFVTYFRRVNDLGILLMADGCADLESICLGGFCRVTDTGFRTLLHTFSNLNKLRVFHGIQLTHLVFHDISATSLSLKHVSLRWCSLLTNDAVKNLSLNKDLSFLDLRDCRSLRDEALQAISTIPKLKTLLLDGSDISDAGLSHLRPMIMNSLVSLSVRGCKKLTDKSITVLFDGLSKIELQELDLSNLPYLSDAAVLQLTRSRFAISELRMRQCPLIGDISVMALASMQVNEDQRHGSSLRLLDLYNCGGLTQLSFKWLKNPYFPRLRWLGVTGSLNRDLVDALARSRPFLHVACHGEELGADHWDNSDILYMHHYDEVDEFEQWLFDGEVEDDEDDDMADAENDGELIL 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6382275 6386419 - Cp4.1LG04g04640.1 Cpe04g00612 468174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00612 641 Gene3D Ribonuclease Inhibitor 263 351 IPR032675 -
Cpe04g00612 641 Gene3D Ribonuclease Inhibitor 352 423 IPR032675 -
Cpe04g00612 641 PANTHER UNCHARACTERIZED 14 563 - -
Cpe04g00612 641 Gene3D Ribonuclease Inhibitor 424 591 IPR032675 -
Cpe04g00612 641 SUPERFAMILY RNI-like 311 565 - -
Cpe04g00612 641 PANTHER RNI-LIKE SUPERFAMILY PROTEIN-RELATED 14 563 - -
Cpe04g00612 641 Gene3D Ribonuclease Inhibitor 15 136 IPR032675 -
Cpe04g00612 641 Gene3D Ribonuclease Inhibitor 137 262 IPR032675 -
Cpe04g00612 641 SUPERFAMILY F-box domain 6 50 IPR036047 GO:0005515
Cpe04g00612 641 Pfam F-box domain 11 45 IPR001810 GO:0005515
Cpe04g00612 641 SMART LRR_CC_2 494 519 IPR006553 -
Cpe04g00612 641 SMART LRR_CC_2 312 337 IPR006553 -
Cpe04g00612 641 SMART LRR_CC_2 468 493 IPR006553 -
Cpe04g00612 641 SMART LRR_CC_2 364 389 IPR006553 -
Cpe04g00612 641 SMART LRR_CC_2 440 465 IPR006553 -
Cpe04g00612 641 SMART LRR_CC_2 390 414 IPR006553 -
Cpe04g00612 641 SUPERFAMILY RNI-like 46 286 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00612 - - - csv:101213291 1145.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00612 Cpe-Chr4:6382275 Cpe06g00856 Cpe-Chr6:5556087 3.36E-11 dispersed
Cpe04g00612 Cpe-Chr4:6382275 Cpe11g00327 Cpe-Chr11:1741555 1.64E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g223 . . . . . . . . . Cmo11g01759 . . . . Sed04g3823 Cpe04g00612 . Bhi05g01663 Tan02g0637 Cmetu01g0006 . . . . . . . . . . . . . . . . . . . Blo04g00588 . . Bda14g00633 . . Bma03g00621 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006869 2 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00612 Cpe_Chr04 FPKM 3.903448 2.816098 4.972145 5.313469 38.31131 37.485176 33.055805 5.38568 5.673116 4.453412