Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00620 ATGAAGTTCTTCCTTTTCTTTCCAACTCATCTTGATCATAAGCCCGTGGTGGCCTCTCCTCTTAAACTTCATCCAAAAATGGGCTTATTTCTTCCCCTTCTTCTATTGTTCTTCCTCGCCTCATCGGCGCTTGGCTGTGATCGCTGTCTCCACCACTCCAAGACTGCCTATATCTCAAATGATTCAACACTTTCATCTGGGGCTTGTGGCTATGGCTCCTTAGCCCTTGGCTTCCTCGACGGACACCTCGCTGCTGGCGTGCCGTCCCTTTACAAGGAGGGCGTTCGTTGTGGTGCATGCTATCAGATGAGGTGCAAAGACAAGAAACTTTGCAGCACAGCTGGGACCAAACTCATTTTGACTGATCTGAATCTACACACCAATAGAACTGATCTTGTTTTGAGTAAGAAAGCTTTTTCTGCGTTGGCTCAAAAGGGCCAACATTACAATATCTTCAAGCGCACGAGTCTCGAGGTTGAATACAAGAGGATACCATGTGAATACAAAAAACAAAATCTGTCAGTAAGAATTGAAGAGTCAAGCCAAAAGCCCCATCACATGGCTATTAAGTTCCTATATCAAGGTGGGCAGACTGATATTCTACTGGTTCACCTACGTCCGGTGGATTCGGGAAGTACGTTCTTCATGAGCAGAAGGCATGGGACGGCGGTGTGGGAAATAGACACGGCACCGGAGGCGGCGGTGGTGTTTCAACTAAGAGTGATTTCAGGGTTCGACGGGATGTGGGTGACGGCGGAGCGGGTAGTTCCGGCGGACTGGAAGCCGGGGATGATCTACGACCTTGGAGTTCAGATGGATGCCATTGCCAAAGGACAAGAGAGCTGTAGAAAATTTAGAGGCGCCTGTGGCTATGGCAATCTCACCTTGGAGCTCTCAAATGGCTACTTCTCGGCTATCACGGCTGCTCTTTACGGCCACGGCCTTGTAATTAGCAAGAAGGCTTTTAGTGAAATGGCTTTGAGTGGCAAAGAGGAATTGCTTATTATTGAAGGAGTTGTGGACGTTCAATTCAAAAGGGTTCCTTGTGAGCACAAAGACAAGAACTTGATGGTTAGAGTGGAAGAGATGAGCAAATATCCCACTTATTTAGCCATCAAATTGCTTTACCAAGGTGGCCAAACCGAGATAGCAAGCATGGAGATCGCTAAGGTGGGTGAATCGAATTGGGCTCCGATGGCTCGCAACTATGGAGCTGTTTGGAACTCGAAACATCACGTACCTGAAGGACCATTGCAATTGCGGTTTATGGTGACTTCTGGATTTGATAAGAAGTGGATCGAGACAAAGTCTGTGCTTCCTGCTGATTGGAGACATGGGCAAATTTACGATACTCGAATTCAAATCAACGACATGGCTAAAGAGAATACAATCTTCAAAATTCTAAATAACCCTACTAGGGCCAAAGCCGCCTTCTACCAGGTCGAGTCCGACGGTGAACGCACCAAGATTGTTGTGACGGATGGCAATGAGAGCTCTCAAACTGACCTTGTAATTAGCAAGAAGGCTTTTGGTGAAATGGCTTTGAGTGGCAAAGAGGAATTGCTTATTATTGAAGGAGTTGTGGACGTTGAATTCAAAAGGGTTCCTTGTGAGTACAAAAACAAGAACTTGATGGTTAGAGTGGAAGAGATGAGCAAACCTCCCACTTATTTAGCCATGAAATTGCTTTACCAAGGTGGCCAAACCGAAATAGTAGGCATAGATATAGCTAAGGTGGGTGAATCGAATTGGGGTATGATGGCTCGGAACTATGGAGCTGTTTGGGACACGAAGCATCCCGTATCGGAAGGACCGTTGCAATTGCGATTTGTGGTGACTTCTGGATTTGATGGGAAGTGGATATGGTCGAAGTACGTGTTTCCTGCTGATTGGAGACCTGGGCAGGTTTACGATACTGGAGTTCAAATGGATGACGTGGGAAAAGAGAATTGTCCAGATGACCAGTGTGCTGATAAGCATTGGGCGGGAGTAGGTGCTTGA 2001 46.68 MKFFLFFPTHLDHKPVVASPLKLHPKMGLFLPLLLLFFLASSALGCDRCLHHSKTAYISNDSTLSSGACGYGSLALGFLDGHLAAGVPSLYKEGVRCGACYQMRCKDKKLCSTAGTKLILTDLNLHTNRTDLVLSKKAFSALAQKGQHYNIFKRTSLEVEYKRIPCEYKKQNLSVRIEESSQKPHHMAIKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGFDGMWVTAERVVPADWKPGMIYDLGVQMDAIAKGQESCRKFRGACGYGNLTLELSNGYFSAITAALYGHGLVISKKAFSEMALSGKEELLIIEGVVDVQFKRVPCEHKDKNLMVRVEEMSKYPTYLAIKLLYQGGQTEIASMEIAKVGESNWAPMARNYGAVWNSKHHVPEGPLQLRFMVTSGFDKKWIETKSVLPADWRHGQIYDTRIQINDMAKENTIFKILNNPTRAKAAFYQVESDGERTKIVVTDGNESSQTDLVISKKAFGEMALSGKEELLIIEGVVDVEFKRVPCEYKNKNLMVRVEEMSKPPTYLAMKLLYQGGQTEIVGIDIAKVGESNWGMMARNYGAVWDTKHPVSEGPLQLRFVVTSGFDGKWIWSKYVFPADWRPGQVYDTGVQMDDVGKENCPDDQCADKHWAGVGA 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6412951 6424145 + Cp4.1LG04g04730.1 Cpe04g00620 468182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00620 666 PANTHER EXPANSIN-LIKE A1-RELATED 314 463 - -
Cpe04g00620 666 PANTHER EXPANSIN-LIKE A1-RELATED 33 279 - -
Cpe04g00620 666 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 286 542 IPR007112 -
Cpe04g00620 666 SUPERFAMILY PHL pollen allergen 354 450 IPR036749 -
Cpe04g00620 666 Gene3D - 539 643 IPR036749 -
Cpe04g00620 666 Gene3D - 168 272 IPR036749 -
Cpe04g00620 666 Gene3D - 350 455 IPR036749 -
Cpe04g00620 666 SUPERFAMILY Barwin-like endoglucanases 479 541 IPR036908 -
Cpe04g00620 666 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 368 451 IPR007117 -
Cpe04g00620 666 Pfam Lytic transglycolase 84 146 IPR009009 -
Cpe04g00620 666 SUPERFAMILY PHL pollen allergen 542 638 IPR036749 -
Cpe04g00620 666 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 171 IPR007112 -
Cpe04g00620 666 SUPERFAMILY Barwin-like endoglucanases 34 169 IPR036908 -
Cpe04g00620 666 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Cpe04g00620 666 PRINTS Expansin/Lol pI family signature 254 268 IPR007118 GO:0005576
Cpe04g00620 666 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Cpe04g00620 666 PRINTS Expansin/Lol pI family signature 87 105 IPR007118 GO:0005576
Cpe04g00620 666 SUPERFAMILY PHL pollen allergen 172 267 IPR036749 -
Cpe04g00620 666 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 185 268 IPR007117 -
Cpe04g00620 666 Gene3D - 456 538 IPR036908 -
Cpe04g00620 666 Gene3D - 46 167 IPR036908 -
Cpe04g00620 666 Pfam Expansin C-terminal domain 545 628 IPR007117 -
Cpe04g00620 666 Pfam Expansin C-terminal domain 357 440 IPR007117 -
Cpe04g00620 666 Pfam Expansin C-terminal domain 175 257 IPR007117 -
Cpe04g00620 666 PANTHER EXPANSIN-LIKE A1-RELATED 487 658 - -
Cpe04g00620 666 PANTHER EXPANSIN-B3 314 463 - -
Cpe04g00620 666 PANTHER EXPANSIN-B3 33 279 - -
Cpe04g00620 666 PANTHER EXPANSIN-B3 487 658 - -
Cpe04g00620 666 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 556 639 IPR007117 -
Cpe04g00620 666 SUPERFAMILY Barwin-like endoglucanases 286 352 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00620 Cpe-Chr4:6412951 Cpe15g00630 Cpe-Chr15:7023144 8.47E-06 dispersed
Cpe15g00628 Cpe-Chr15:6998806 Cpe04g00620 Cpe-Chr4:6412951 6.23E-07 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00620 - - cpep:111792494 511.146