Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00628 ATGGGTGCCGACGGTGATTCCAGCGAGCACCGGGTTGAGGGCGGTGGCGATGGTGAAGAAGGTGGAGTTGGTGTTTCTGTCAATATTCGATGTTCTAATGGTTCGAAATTTTCGGTGACGATGAGTCTTGATTCCACGGTTGGGACATTTAAATCAATTCTTGCTCAGAATTGTGATATTCCAGCTGATCAACAGCGATTGATCTACAAGGGTCGCATCTTGAAGGACGATCAGACCTTAGTCAGTTATGGGTTACAGGCAGATCATACTATTCACCTGGTTCGTGGGTTTCCCCAAGGTTCGTCAGCACCGTCTGCACCTGCTTCTAATGATAATAGTAGAAGTTCTGAGACTGCTACTGCTCCCGGTGTTACAAGAGGTGTTGGTTCCACTGGGAGTGATGCTTTTGGAAATGCTGGCCTTGGTGCATCTTTGTTTCCTGGACTAGGTTTCAATTCTCTCGGTGGCGGTGGAGCTGGACTTCCCGAGTTTGAACAAGTGCAACAGCAGTTGACTCAGAATCCAAACATGATGAGGGAAATAATGAACATGCCTGCAATCCAGAACTTGATGAATAACCCTGACATGATGCGGAGCTTAATTATGAGCAATCCTCAGATGAGGGATATTATTGACAGGAACCCCGAGCTTGCACATATACTCAATGACCCTGGTATTCTTCGGCAGACATTAGAGGCTGCAAGGAATCCAGAACTCATGAGAGAGATGATGAGAAACACTGACAGAGCCATGAGTAACATCGAATCTTCTCCTGAGGGATTTAACATGCTGAGACGGATGTATGAAAATGTTCAGGAGCCATTTCTGAATGCAACAACGATGACTGGAAATGCTGGGAATGATTCGAGTTCAAACCCATTTGCAGCTCTCCTGGCAAACCAAGGGGGTGCACAAGCTAGGAACGAGTCTAATAATTCTTCTACTACAGGATCGGAAACAACCGAAAATGCTGCTCCGAATACGAATCCGCTTCCTAATCCCTGGGGAGGAACTCAGACAACAACCACACAGCCTACTCCAGTAGGTGATGCAAGGCCTGGTATTGGGGGTTTAGGAGGGGCTGGTCGCACAAATGTGGAACGTTCTGTTGGTGGCACGCCGAATGTAGCTCAGTTGAATCAGTTTCTGCAGAACCCGGCTATTTCACAGATGATGCAGAGCCTGCTCTCCAATCCTCAGTATATGAATCAAATCCTCAATCTCAACCCACAGACGCGGGGTATGGTTGATATGAATCCTCAATTAAGAGAAATGATGCAAAATCCCGAGTTCGTTCGCCAATTAACTAATCCTGAGATGATACAGCAAATGCTATCAGTTCAGCAGTCACTTTTCTCGACCTTAAATCGACAACCATCATCTCAGGATTCTGCTCAATCGGGCACTGCTGCAGGTGTTCCTAACACTGCTGGATTGGAGATGTTGATGAGCCTGTTCGGTGGGCTTGGCGCCGGTGGGTTGGCTACTCCGAACAATCCGAACGTGCCCCCAGAAGAACTATATGCAACTCAACTTTCACAGCTCCAAGAGATGGGTTTTTTCGACACCCAAGAGAACATCAGAGCTCTACGCGCTACGTCCGGGAACGTACATGCTGCTGTCGAGCGACTGCTGGGAAATCTCGGGCAGTAA 1653 47.73 MGADGDSSEHRVEGGGDGEEGGVGVSVNIRCSNGSKFSVTMSLDSTVGTFKSILAQNCDIPADQQRLIYKGRILKDDQTLVSYGLQADHTIHLVRGFPQGSSAPSAPASNDNSRSSETATAPGVTRGVGSTGSDAFGNAGLGASLFPGLGFNSLGGGGAGLPEFEQVQQQLTQNPNMMREIMNMPAIQNLMNNPDMMRSLIMSNPQMRDIIDRNPELAHILNDPGILRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMTGNAGNDSSSNPFAALLANQGGAQARNESNNSSTTGSETTENAAPNTNPLPNPWGGTQTTTTQPTPVGDARPGIGGLGGAGRTNVERSVGGTPNVAQLNQFLQNPAISQMMQSLLSNPQYMNQILNLNPQTRGMVDMNPQLREMMQNPEFVRQLTNPEMIQQMLSVQQSLFSTLNRQPSSQDSAQSGTAAGVPNTAGLEMLMSLFGGLGAGGLATPNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6501872 6513906 - Cp4.1LG04g04520.1 Cpe04g00628 468190

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00628 550 Gene3D - 24 110 - -
Cpe04g00628 550 ProSiteProfiles Ubiquitin domain profile. 25 100 IPR000626 GO:0005515
Cpe04g00628 550 SUPERFAMILY Ubiquitin-like 24 113 IPR029071 -
Cpe04g00628 550 MobiDBLite consensus disorder prediction 96 129 - -
Cpe04g00628 550 SMART ubq_7 25 96 IPR000626 GO:0005515
Cpe04g00628 550 MobiDBLite consensus disorder prediction 102 127 - -
Cpe04g00628 550 Pfam UBA/TS-N domain 508 544 IPR015940 -
Cpe04g00628 550 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 503 547 IPR015940 -
Cpe04g00628 550 PRINTS Ubiquitin signature 56 76 IPR019956 -
Cpe04g00628 550 PRINTS Ubiquitin signature 77 98 IPR019956 -
Cpe04g00628 550 MobiDBLite consensus disorder prediction 1 24 - -
Cpe04g00628 550 MobiDBLite consensus disorder prediction 301 350 - -
Cpe04g00628 550 Gene3D - 199 257 - -
Cpe04g00628 550 SMART uba_6 508 546 IPR015940 -
Cpe04g00628 550 CDD UBA_PLICs 508 546 - -
Cpe04g00628 550 MobiDBLite consensus disorder prediction 301 348 - -
Cpe04g00628 550 PANTHER UBIQUILIN 1 550 - -
Cpe04g00628 550 CDD Ubl_Dsk2p_like 26 97 - -
Cpe04g00628 550 SUPERFAMILY UBA-like 504 546 IPR009060 GO:0005515
Cpe04g00628 550 MobiDBLite consensus disorder prediction 1 17 - -
Cpe04g00628 550 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 1 550 - -
Cpe04g00628 550 SMART CBM 409 444 IPR006636 -
Cpe04g00628 550 SMART CBM 147 191 IPR006636 -
Cpe04g00628 550 SMART CBM 204 243 IPR006636 -
Cpe04g00628 550 SMART CBM 373 405 IPR006636 -
Cpe04g00628 550 Gene3D - 490 549 - -
Cpe04g00628 550 Pfam Ubiquitin family 27 94 IPR000626 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00628 K04523 UBQLN, DSK2; ubiquilin - csv:101210644 872.463
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00628 Cpe15g00637 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00628 Cpe-Chr4:6501872 Cpe08g01293 Cpe-Chr8:9331556 0 dispersed
Cpe14g01055 Cpe-Chr14:8816207 Cpe04g00628 Cpe-Chr4:6501872 0 wgd
Cpe15g00637 Cpe-Chr15:7104349 Cpe04g00628 Cpe-Chr4:6501872 0 wgd
Cpe02g00046 Cpe-Chr2:233770 Cpe04g00628 Cpe-Chr4:6501872 8.44E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g281 . . . . . Bpe12g00148 . . Cmo19g00813 Cmo11g01783 . . . . Sed05g2177 Cpe04g00628 Cpe15g00637 Bhi05g01590 Tan02g0585 Cmetu01g0562 . . . . Cla02g00354 Cam02g0363 Cec02g0364 Cco02g0371 Clacu02g0354 Cmu02g0351 . Cone12ag1271 Cone8ag1325 . . . Csa07g00180 . . Blo04g00603 Blo13g00475 . Bda14g00644 . . Bma03g00635 . . . . . Cma19g00792 Car11g01410 Car19g00609 . . . . . . . . . . . . . . . . Lsi11g01279 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005812 1 1 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 4 2 0 1 1 0 1 1 1 1 2 1 3 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00628 Cpe_Chr04 FPKM 2.623086 2.120125 5.977782 6.416305 10.244732 11.411224 11.888389 3.104195 3.317822 3.351943