Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00630 ATGGGGATTTGTTGGGGTTCTCCTGTTGGTAATCATACCCCTAATACCACTGGACATCTCAGTTCAGTGGTATCCCAGACAACATCATCAACTGTCAGCAACATCTCGAAGAATAGTAATTTCTCGGTAGCAAGTGGTGATGAAGCTTTTCCAAATGGCCAGATTTTGCCCTCTCCAAATTTGAGAGAGTACAGTTTAGCAGAGCTCAAAGCTGCAACCAAAAACTTCAGAGCTGAGGCAATGCTTGGTGAAGGAGGTTTTGGCAAAGTTTACAAAGGTTGGCTCGAGGAGAAGGGCCATGGAAAGAAGGGAAATTCGATGGTTATTGCGGTCAAAAAGTTGAAATCTGATAGCTTACAAGGAATTGAGGAGTGGCAGTCAGAAGTGGGCTTCTTAGGAAGACTTTCTCACCCAAATCTGGTGAAGCTGCTCGGTTACTGTTGGGAGGATCACGAGCTACTCCTCACTTATGAGTTCATGCAAAAGGGAAGTTTGGAGAACCATCTCTTTGGAAGGGGCTCAGCAGTTACACCACTAGAGTGGGATACTCGGCTTAAGATCGCCATAGGCGCTGCCCGAGGGCTGGCGTTCTTGCACACATCGGACAAGCAAGTAATTTATAGAGATTTCAAGGCTTCTAATATTCTGCTTGATGGGTCTTATACACCAAAGCTATCAGACTTTGGTTTGGCAAAATTGGGTCCTTCTGAAAGTAAATCTCATTTGTCGACTCGAGTTATGGGCACTAATGGTTATGCTGCCCCGGAGTATATATCCACAGGACATTTGTATGTCAAGAGTGACGTGTATGGTTTTGGAGTTGTACTGATCGAGATGTTAACGGGTTTACGTGCACTCGACGAAAACCGTCCAACCGGTCACGAAAACTTGGTGGATTGGATAAAGCCATACTTATCAGAGAGGAGGAAGCTGAAAAACGTGATGGACTTTCGGTTGGAAGGCAAGTATCCATCGAGATCAGCATTCCAAGTGGCTCAGCTTGCTCTACAATGTATTGAGCAAGAACAGAAGAACAGACCAGCAATGAACGAGGTTGTCGAGACACTGGAACGGATCGAAGCTATGAACGACCGACCGAATGAGCCTAGAAACTGTTCGCCCCGCCAGCCTCTTCACCATAGCTCTCCACTTCACGTGAAGCAATATGGAGCCCATGCTAATCAAACATCACCCAGGTTGAGATAG 1206 46.1 MGICWGSPVGNHTPNTTGHLSSVVSQTTSSTVSNISKNSNFSVASGDEAFPNGQILPSPNLREYSLAELKAATKNFRAEAMLGEGGFGKVYKGWLEEKGHGKKGNSMVIAVKKLKSDSLQGIEEWQSEVGFLGRLSHPNLVKLLGYCWEDHELLLTYEFMQKGSLENHLFGRGSAVTPLEWDTRLKIAIGAARGLAFLHTSDKQVIYRDFKASNILLDGSYTPKLSDFGLAKLGPSESKSHLSTRVMGTNGYAAPEYISTGHLYVKSDVYGFGVVLIEMLTGLRALDENRPTGHENLVDWIKPYLSERRKLKNVMDFRLEGKYPSRSAFQVAQLALQCIEQEQKNRPAMNEVVETLERIEAMNDRPNEPRNCSPRQPLHHSSPLHVKQYGAHANQTSPRLR 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6523974 6528518 - Cp4.1LG04g04550.1 Cpe04g00630 468192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00630 401 PANTHER SERINE/THREONINE-PROTEIN KINASE PIX13-RELATED 21 368 - -
Cpe04g00630 401 MobiDBLite consensus disorder prediction 361 401 - -
Cpe04g00630 401 CDD STKc_IRAK 82 359 - -
Cpe04g00630 401 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Cpe04g00630 401 Pfam Protein tyrosine and serine/threonine kinase 79 356 IPR001245 GO:0004672|GO:0006468
Cpe04g00630 401 ProSitePatterns Protein kinases ATP-binding region signature. 82 113 IPR017441 GO:0005524
Cpe04g00630 401 SUPERFAMILY Protein kinase-like (PK-like) 60 383 IPR011009 -
Cpe04g00630 401 ProSiteProfiles Protein kinase domain profile. 76 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g00630 401 MobiDBLite consensus disorder prediction 1 21 - -
Cpe04g00630 401 Gene3D Transferase(Phosphotransferase) domain 1 160 373 - -
Cpe04g00630 401 Gene3D Phosphorylase Kinase; domain 1 60 159 - -
Cpe04g00630 401 PANTHER OS01G0588500 PROTEIN-RELATED 21 368 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00630 Cpe-Chr4:6523974 Cpe08g01286 Cpe-Chr8:9287038 4.35E-147 dispersed
Cpe11g00786 Cpe-Chr11:6375438 Cpe04g00630 Cpe-Chr4:6523974 6.23E-94 dispersed
Cpe14g01061 Cpe-Chr14:8860836 Cpe04g00630 Cpe-Chr4:6523974 7.19E-152 wgd
Cpe15g00641 Cpe-Chr15:7122030 Cpe04g00630 Cpe-Chr4:6523974 8.69E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62341 PF07714 PK_Tyr_Ser-Thr 7.60E-46 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00630 - - csv:101210490 707.983