Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00631 AGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGAAGCAGCAGCAATGGGTAGTGGAGAGGAAGAAGAGGAAGAAAGGGCGGCCATCGCTGTTGGATCTTCAAAAGCGGAATCTAAAGGAGCAGCAAGAACAAGAGGATGAAGAGCAGAAGCAACAGAATCACAACAAACCCAAGCGAATCGACCGGTCCTCCGCAATTCCCAACCCTAATTACGCTTCTTCTACTCCCTTGCGGCGATCTACTCGCCGGAATCCCAACCCCGACGGACTCACTCCCGATGACCACGACGATGCCGAATACAACCAAGAATTGGCCAGGAACCGCCGCGAGAGGAAACTCAAGCTCGTTCTCAGATTGCACTCTCAGAAACCTCCCGTCAATTCGTCCTCTCTCAATTCCGGTGGTTCCGATTCTAATGCGGAGGGGGATGATAATGTTGCGTCGGCTAATAAGAAGCGGAAGATCGGTTCAATTGCGGAGGGATCTAGGATCCAAGACTCCGAGAAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGAAGCAGCAGCAATGGGTAAGGTAGTGGAGAGGAAGAAGAGGAAGAAAGGGCGGCCATCGCTGTTGGATCTTCAAAAGCGGAATCTAAAGGAGCAGCAAGAACAAGAGGATGAAGAGCAGAAGCAACAGAATCACAACAAACCCAAGCGAATCGACCGGTCCTCCGCAATTCCCAACCCTAATTACGCTTCTTCTACTCCCTTGCGGCGATCTACTCGCCGGAATCCCAACCCCGACGGACTCACTCCCGATGACCACGACGATGCCGAATACAACCAAGAATTGGCCAGGAACCGCCGCGAGAGGAAACTCAAGCTCGTTCTCAGATTGCACTCTCAGAAACCTCCCGTCAATTCGTCCTCTCTCAATTCCGGTGGTTCCGATTCTAATGCGGAGGGGGATGATAATGTTGCGTCGGCTAATAAGAAGCGGAAGATCGGTTCAATTGCGGAGGGATCTAGGATCCAAGACTCCGAGAAGGGTGAAAAGTCCATTTCTACTACAAACCCATCGGAAACCCTTCAAGGGTCGCATATGGATTCGGGACCCTCGACGCTTTTACCTGATAAGAAGCTTTTACTCTTCATCCTCGACAGGCTTCAAAAGAAGGATATCTATGGTGTGTTTTCCGAACCAGTGGACCCCAACGAGCTTCCAGACTATCATGAAATTATAGAGCATCCGATGGATTTTGGGACTGTTCGTGGGAAGCTTACTTCTGGAGCTTATACCAGTTTGGAACAGTTTGAAAAAGACATTCTCTTAATCAGTTCAAATGCAATGCAATACAATGCCCCAGATACCATATATTTTCGGCAGGCACGTACCATACAAGAGTTAGCAAAAAAGAATTTTAGGAACCTGAGACAAGATAGTGATGATAATGTACCAGAACCTAAAGTAGCAAGAAGAGGTAGACCACCGACCAAGCATTTGAAAAAACCATTGGGTCGACCTTCCTTGGAACGTGCTGGTTCCGAGTTTTCCCCGGATGCCACTCTTGCTACTGGTGGTGAAAACGCAAATTGGTCGAACGATTTGAGGAAAGGATTTCATCATTTTGAAAAAACTAGTTTAGCTGATTTTTCTGGCAGATTCTCCTTTTCTTCCAATAGTGATGCTGCTGCATTTAACTTGTTTAACCAGAGCAGAATTGATAGAAGCGATGATATTACAGGTTCTGGACTGAGAATTAATTCAGTGAGACAGGGGAAAAGACCAATTGTCTCTGATGAGAATAGGCGTAACACATATAAGCAATTTCAAGCGGCAGCTGCTTTGCTAGAACCCTCTGTGTTGAATACATTTGATAGAGAGAGGAAGCTTTTAATGCCAGTCGGACTTTTCTTGGAGCATGCTTATGCACGAAGCCTCGCTCGATTCGCTGCAGATCTCGGATCTGTAGCTTGGAGAGTTGCTTCGAAGAAAATCGAAAGATCTTTACCAGCAGGTTCAGGTTTTGGTCCTGGATGGGTTGTAGAAAATGATACCACACCAAAGAGAGTGTTTCTACCTCAAGCTGAACTCTGTCAAATGTCAACATTACAGCAGCCTCTTGCTCCTGCACAAAAGGGCGTTCGATCATCCGACAACTCCGAAGCTGATACTTCATCTAAGACACACGACGACGAGCCTTCTCATGCCCCCAGTTCAGATGGCCATTTAAGTAGGCCTCCCACTGAGTTTGCTGCAACTTCATCATCACCGTCGAGTACTCAACGATCTTCTGAGCCGTGCAGGGGACAGGCTGAAGCGGTCGAAGGATTGAATCCCAGTAGTGATTATAATGTATTGGAAAGTAGTATTCCAACCTCAAGGCCTTCATTTCAGAAACAACGCCAGACTCCAACAATCCGCCCTGGTATGAATGGATTCAATGGTACTTATGCCTTTGATCTCTCTGCTCACAGGGGGCAACTAACAGGAGCATCCGAGCCTGCTGGTGAACAACCTCAGTCATCTCGAACGCTCGAGACAACGACCTCGAGGACTAATGCTAACTTCATCCATCCAGCAACGGATCCCAGTACAACAAACTCTTCCAGTTCATTGCTCGGGCCGGGGAATGAGGCTCATTTGCAGGGGCCATCACCAGCAGAAAAAACAACAACAATACACCACAAACCGGAATCAGTTCCCCCGGACGTGAACACGAGATTTAAATCTCCAGGATCTCCTAGCTGTAGTAAGGTGGAGTGTGGTAAGCCTGATTTAGTATTGCAGCTATGA 2802 47.89 REREREGEREREREREGKQQQWVVERKKRKKGRPSLLDLQKRNLKEQQEQEDEEQKQQNHNKPKRIDRSSAIPNPNYASSTPLRRSTRRNPNPDGLTPDDHDDAEYNQELARNRRERKLKLVLRLHSQKPPVNSSSLNSGGSDSNAEGDDNVASANKKRKIGSIAEGSRIQDSEKRERERGRERERERERGEAAAMGKVVERKKRKKGRPSLLDLQKRNLKEQQEQEDEEQKQQNHNKPKRIDRSSAIPNPNYASSTPLRRSTRRNPNPDGLTPDDHDDAEYNQELARNRRERKLKLVLRLHSQKPPVNSSSLNSGGSDSNAEGDDNVASANKKRKIGSIAEGSRIQDSEKGEKSISTTNPSETLQGSHMDSGPSTLLPDKKLLLFILDRLQKKDIYGVFSEPVDPNELPDYHEIIEHPMDFGTVRGKLTSGAYTSLEQFEKDILLISSNAMQYNAPDTIYFRQARTIQELAKKNFRNLRQDSDDNVPEPKVARRGRPPTKHLKKPLGRPSLERAGSEFSPDATLATGGENANWSNDLRKGFHHFEKTSLADFSGRFSFSSNSDAAAFNLFNQSRIDRSDDITGSGLRINSVRQGKRPIVSDENRRNTYKQFQAAAALLEPSVLNTFDRERKLLMPVGLFLEHAYARSLARFAADLGSVAWRVASKKIERSLPAGSGFGPGWVVENDTTPKRVFLPQAELCQMSTLQQPLAPAQKGVRSSDNSEADTSSKTHDDEPSHAPSSDGHLSRPPTEFAATSSSPSSTQRSSEPCRGQAEAVEGLNPSSDYNVLESSIPTSRPSFQKQRQTPTIRPGMNGFNGTYAFDLSAHRGQLTGASEPAGEQPQSSRTLETTTSRTNANFIHPATDPSTTNSSSSLLGPGNEAHLQGPSPAEKTTTIHHKPESVPPDVNTRFKSPGSPSCSKVECGKPDLVLQL 933
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6530445 6537259 - Cp4.1LG04g04530.1 Cpe04g00631 468193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00631 933 MobiDBLite consensus disorder prediction 94 116 - -
Cpe04g00631 933 MobiDBLite consensus disorder prediction 36 67 - -
Cpe04g00631 933 MobiDBLite consensus disorder prediction 304 327 - -
Cpe04g00631 933 PRINTS Bromodomain signature 395 408 IPR001487 GO:0005515
Cpe04g00631 933 PRINTS Bromodomain signature 425 443 IPR001487 GO:0005515
Cpe04g00631 933 PRINTS Bromodomain signature 409 425 IPR001487 GO:0005515
Cpe04g00631 933 PRINTS Bromodomain signature 443 462 IPR001487 GO:0005515
Cpe04g00631 933 MobiDBLite consensus disorder prediction 353 373 - -
Cpe04g00631 933 MobiDBLite consensus disorder prediction 270 286 - -
Cpe04g00631 933 MobiDBLite consensus disorder prediction 1 23 - -
Cpe04g00631 933 MobiDBLite consensus disorder prediction 477 530 - -
Cpe04g00631 933 ProSiteProfiles Bromodomain profile. 392 462 IPR001487 GO:0005515
Cpe04g00631 933 Coils Coil 212 237 - -
Cpe04g00631 933 MobiDBLite consensus disorder prediction 477 496 - -
Cpe04g00631 933 Pfam Bromodomain 387 466 IPR001487 GO:0005515
Cpe04g00631 933 MobiDBLite consensus disorder prediction 725 741 - -
Cpe04g00631 933 MobiDBLite consensus disorder prediction 328 352 - -
Cpe04g00631 933 MobiDBLite consensus disorder prediction 152 199 - -
Cpe04g00631 933 CDD Bromodomain 380 474 - -
Cpe04g00631 933 MobiDBLite consensus disorder prediction 212 243 - -
Cpe04g00631 933 MobiDBLite consensus disorder prediction 301 374 - -
Cpe04g00631 933 Gene3D - 375 493 IPR036427 GO:0005515
Cpe04g00631 933 PANTHER BROMODOMAIN CONTAINING PROTEIN 196 933 - -
Cpe04g00631 933 PANTHER BROMODOMAIN CONTAINING PROTEIN 25 178 - -
Cpe04g00631 933 MobiDBLite consensus disorder prediction 128 151 - -
Cpe04g00631 933 ProSitePatterns Bromodomain signature. 398 454 IPR018359 -
Cpe04g00631 933 MobiDBLite consensus disorder prediction 72 93 - -
Cpe04g00631 933 SUPERFAMILY Bromodomain 372 485 IPR036427 GO:0005515
Cpe04g00631 933 MobiDBLite consensus disorder prediction 1 286 - -
Cpe04g00631 933 Coils Coil 36 61 - -
Cpe04g00631 933 MobiDBLite consensus disorder prediction 784 813 - -
Cpe04g00631 933 MobiDBLite consensus disorder prediction 832 851 - -
Cpe04g00631 933 MobiDBLite consensus disorder prediction 857 879 - -
Cpe04g00631 933 MobiDBLite consensus disorder prediction 857 933 - -
Cpe04g00631 933 MobiDBLite consensus disorder prediction 708 724 - -
Cpe04g00631 933 SMART bromo_6 373 481 IPR001487 GO:0005515
Cpe04g00631 933 MobiDBLite consensus disorder prediction 836 851 - -
Cpe04g00631 933 MobiDBLite consensus disorder prediction 751 770 - -
Cpe04g00631 933 MobiDBLite consensus disorder prediction 708 817 - -
Cpe04g00631 933 PANTHER BROMODOMAIN AND WD REPEAT-CONTAINING PROTEIN 1-LIKE 196 933 - -
Cpe04g00631 933 MobiDBLite consensus disorder prediction 248 269 - -
Cpe04g00631 933 PANTHER BROMODOMAIN AND WD REPEAT-CONTAINING PROTEIN 1-LIKE 25 178 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00631 K22184 BRD9; bromodomain-containing protein 9 - csv:101218234 1079.32
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00631 Cpe15g00642 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00631 Cpe-Chr4:6530445 Cpe06g00774 Cpe-Chr6:4882970 5.79E-77 dispersed
Cpe15g00642 Cpe-Chr15:7130332 Cpe04g00631 Cpe-Chr4:6530445 1.35E-45 wgd
Cpe02g00031 Cpe-Chr2:162221 Cpe04g00631 Cpe-Chr4:6530445 1.59E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g294 . . . . . Bpe12g00149 . . Cmo19g00818 Cmo11g01786 . . . . . Cpe04g00631 Cpe15g00642 Bhi05g01248 Tan02g0781 . . . . . Cla02g00347 Cam02g0356 Cec02g0357 Cco02g0363 Clacu02g0348 Cmu02g0345 Cre02g0677 . . . . . Csa07g00186 . Cme01g01147 Blo04g00606 Blo13g00473 . Bda14g00648 Bpe15g00784 . Bma03g00637 Bma08g00717 . . . Cma11g01333 Cma19g00798 Car11g01413 Car19g00614 . . . . . . . . . . . . . . . . Lsi11g01285 . Chy01g00594 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005813 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00631 Cpe_Chr04 FPKM 2.519389 2.743636 20.294832 23.901482 73.305977 75.402962 80.899406 31.902748 30.440151 32.567719