Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00635 ATGAACATGGTTTGGCTCCTCTTATTACTCCTTTATATCTCAGAAGGGAGCTCAGGACATGAGGTAGTGAAAGTTGGAGCTATATTTTCACTTGCTTCTGTCAATGGGAAAGTGTCCAAGATAGCCATAGAGGCTGCTGAGAGAGATGTGAATGCTGATCCAAGTGTTCTTGGTGGAAGGAAGCTATCCATATCTATTCATGATGCTAATTACAGTGGTTTTCTTGGTATCACAGGAGTTGCCATCATCGGTCCTCAAGATGCTACAATGGCACAGATACTCTCACATCTTTCAAATGAACTCCATGTCCCATTATTATCATACACAGCCTTGGACCCAGCACTTGCTACTCTGCAGTATCCATACTTCATTCAAACAGCTCCAAATGATCAGTTCCAAATGGCTGCAATTACAGACATTATCGGTTATTATGATTGGCACGACATAGTCGTCGTTTACACCGACGATGATCACTGTCGAAACGGTATGGTTGCATTAGGAGATAAACTAGAAGAGAGAAGCTTAAAAATTTCCTCTAAAGTGGCACTTCCCCCTTACCCAACAGCAACTAGAACAGAAGTTCGAGATGCACTTCTAAAGATAAAAACGATGGAATCTCGAGTGATCGTATTGTACACGTTCTCGAAAACAGGTTTCTTGGTTTTTGAAGTGGCTCAAAGCCTTGGAATGATGGAGGCTGGATTTGTTTGGATAGCTTCTAGTTGGTTGTCAACAGTAATAGATTCTTATTCACCACTTCCCTTGAAAACTACCAACTCCATCCAAGGAGTTCTTACGCTTCGACTGCACACACCGAGTTCTAAAAGGAAGCGATCTTTTATATCTCGTTGGAACGAGCTGAGTAATGGCTCGGTTGGGTTGAATGCATACAGCCTATATGCATATGATACTGTTTGGATGATTGCAAAAGGATTAAAAGAGTTATTTGATCAAAATGGCACCATTTCCTTCTCCAAAGATGAACGTGTTGGTAGTCTTAGTGGAGAGAGCTTGGATTTTAGCTCACTAGGAATCTTTAATGAAGGAAAGGAACTGCTTAACAATGTATTGAACATCAACATGACTGGTCTGACAGGGCCTATTCAGTTTCTAGATAGATATCCTTTACATCCTTCATATGATATCTTAAATGTTGTGAAATCTGGTATGAAGAGAATTGGGTATTGGTCCAACTATTCCGGGTTATCTATCGTGACACCAGAAACGTTGTATGAACGATCAGCCAATCGTTCTACATCGTCCCAACAGTTAAGCAGTATAGTGTGGCCTGGGGGATCAAGAATAAAGCCTCGTGGTTGGGTTCTACCACTCGATGGAAGGCGGTTAAGAATTGGCGTTCCACATAGAGTTAGTTATCAGGAATTTGTGACACCGGGTAATGGTAATGGCACAATCAGAGGATACTGCATAGATGTGTTCACTGCTGCCATAAACTTGCTTCCATATGCAGTGAATTATGAGTTTGTTTTGTTTGGAGATGGTGAGAAGAATCCTAGCTACTTTGAGCTTGTAAATAATGTTGCATTGGAAGAATTTGATGCTGCTGTCGGTGACATTGCCATTGTGACTAGTCGGACAAAGGTTGTCGACTTTACACAGCCTTATATCGACTCGGGGTTGGTCGTTATGATCCTTGTCAAGAAGTTGAATTCAAGTCCTTTGGCATTCCTTCGCCCATTCACACCAATGATGTGGATTGCCACAGCAGCCTTTTTCCTCCTCATTGGATTAGTCGTGTGGATTTTGGAACATCGAAAAAACGATGAATTCCGCGGAAATCCCAGGACGCAACTTGTCACGATCCTCTGGTTTGGCTTCTCTACAATGTTTTTTTCACATAGAGAAAACGTTGTGAGCACGCTCGGACGTTGTGTGCTTGTCGTCTGGCTTTTCGTGGTTCTAATTATCAACTCGAGCTACACCGCTAGTCTAACATCCATATTCACAGTACAACAACTATCCTCACCTATCACAGGAATTGATTCATTGATATCTAGCCATGTACCTATAGGATTCCAAGTTGGTTCATTTGCTGAAAGTTACTTAACTGAGCAACTTAACGTCCAAAAGTCTAGGCTAATTGCTCTTGGATCCCCAAAGGAGTATGCTGCTGCCCTAAAAAACGGAACGGTCGGAGCTATTGTCGACGAACAACCATACATCGACCTCTTTCTCACAGAGTACTGCGATTTTTCAATTAGGGGCCAACAGTTCACCAAAAGTGGATGGGGATTTGCATTTCCACGAGACTCTCCATTAGCAGTCGACTTATCGACCGCCATACTAACTCTATCAGAGAGCGGCCGCCTTCAAAAGCTTCACGATAAGTGGTTCTCAAGAAAGTCTTGCAGTTCTGGAGAATCCGATTTAGAACAGCTTCAGTTACAGAGTTTCATCGGTCTGTTCTCCATTTGTGCCGGCGTATGTTTACTCGCTCTTCTGCTTCACTTTTTCTTGACGATGTGCCAATTCAACCGCCAGTTGAAACGAGATCCAGAATCTTCGCCGTCGGCCAGCGGCAGTTCTACTTCTACCCCTACGCGTCTGCGGAAATTCTTGGCGTTTGCAGACAAAAAGAAGAATCGAAAGACGAGATATTCGAAATCAAAGATCGAAGATAATAATACATTCTCGAGTGAACATCGAGAGGATTTTGTAAATTGA 2685 42.61 MNMVWLLLLLLYISEGSSGHEVVKVGAIFSLASVNGKVSKIAIEAAERDVNADPSVLGGRKLSISIHDANYSGFLGITGVAIIGPQDATMAQILSHLSNELHVPLLSYTALDPALATLQYPYFIQTAPNDQFQMAAITDIIGYYDWHDIVVVYTDDDHCRNGMVALGDKLEERSLKISSKVALPPYPTATRTEVRDALLKIKTMESRVIVLYTFSKTGFLVFEVAQSLGMMEAGFVWIASSWLSTVIDSYSPLPLKTTNSIQGVLTLRLHTPSSKRKRSFISRWNELSNGSVGLNAYSLYAYDTVWMIAKGLKELFDQNGTISFSKDERVGSLSGESLDFSSLGIFNEGKELLNNVLNINMTGLTGPIQFLDRYPLHPSYDILNVVKSGMKRIGYWSNYSGLSIVTPETLYERSANRSTSSQQLSSIVWPGGSRIKPRGWVLPLDGRRLRIGVPHRVSYQEFVTPGNGNGTIRGYCIDVFTAAINLLPYAVNYEFVLFGDGEKNPSYFELVNNVALEEFDAAVGDIAIVTSRTKVVDFTQPYIDSGLVVMILVKKLNSSPLAFLRPFTPMMWIATAAFFLLIGLVVWILEHRKNDEFRGNPRTQLVTILWFGFSTMFFSHRENVVSTLGRCVLVVWLFVVLIINSSYTASLTSIFTVQQLSSPITGIDSLISSHVPIGFQVGSFAESYLTEQLNVQKSRLIALGSPKEYAAALKNGTVGAIVDEQPYIDLFLTEYCDFSIRGQQFTKSGWGFAFPRDSPLAVDLSTAILTLSESGRLQKLHDKWFSRKSCSSGESDLEQLQLQSFIGLFSICAGVCLLALLLHFFLTMCQFNRQLKRDPESSPSASGSSTSTPTRLRKFLAFADKKKNRKTRYSKSKIEDNNTFSSEHREDFVN 894
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6560466 6565342 + Cp4.1LG04g04570.1 Cpe04g00635 468197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00635 894 SMART GluR_14 450 787 IPR001320 GO:0015276|GO:0016020
Cpe04g00635 894 MobiDBLite consensus disorder prediction 836 894 - -
Cpe04g00635 894 SUPERFAMILY Periplasmic binding protein-like I 17 440 IPR028082 -
Cpe04g00635 894 SUPERFAMILY Periplasmic binding protein-like II 425 787 - -
Cpe04g00635 894 Gene3D - 129 402 - -
Cpe04g00635 894 PANTHER GLUTAMATE RECEPTOR 3.6 17 883 - -
Cpe04g00635 894 Pfam Receptor family ligand binding region 41 387 IPR001828 -
Cpe04g00635 894 Gene3D - 560 699 - -
Cpe04g00635 894 Pfam Bacterial extracellular solute-binding proteins, family 3 462 786 IPR001638 -
Cpe04g00635 894 Gene3D - 443 559 - -
Cpe04g00635 894 Gene3D - 41 377 - -
Cpe04g00635 894 PIRSF IGluLR_plant 1 893 IPR017103 -
Cpe04g00635 894 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 17 883 - -
Cpe04g00635 894 MobiDBLite consensus disorder prediction 836 856 - -
Cpe04g00635 894 MobiDBLite consensus disorder prediction 873 894 - -
Cpe04g00635 894 Gene3D - 711 792 - -
Cpe04g00635 894 Pfam Ligand-gated ion channel 787 815 IPR001320 GO:0015276|GO:0016020
Cpe04g00635 894 CDD GluR_Plant 447 785 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00635 Cpe15g00647 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00635 Cpe-Chr4:6560466 Cpe06g00011 Cpe-Chr6:38883 0 dispersed
Cpe15g00647 Cpe-Chr15:7172461 Cpe04g00635 Cpe-Chr4:6560466 0 wgd
Cpe02g00025 Cpe-Chr2:134377 Cpe04g00635 Cpe-Chr4:6560466 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00635 K05387 - csv:101208602 1407.89