Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00646 ATGTCGGTTTCGCAAGCCCTAGGTGGCAAGTCCAGATGCGGCCGTGCGATCGGCCCTTCCCTCGATAAGATTGTCAAGAACGCGGCCTGGCGTAAGCATTCTCACCTTGTTTCCTCTTGCAAATCCGTTCTCGATAAGCTTGATTCTATTTCGGAAGCTTCTCTTGATCCTGCTTCCCCGATTGCTGGCCTTTCACCGGCTGATGCGGAGTTTGTGCTCCAACCGCTCCTTTTGGCCCTCGATGCCGCCTACGTCAAGGTTGCTGAGCCCGCGCTTGAGTGCGTCTTCAAATTGTTCTCCCGCGGTCTATTCCGTGGCGAGATCGAGAGGCCGGATGGCGAGGCGAATTCTGGTGCTAGTTCCATTGTGTATAGGATCGTTGAGTCTGTGTGCAAGTCGGGAGGTCTTGGTGATGAAGGAATTGAGCTCATTGTTCTCAGGGTGTTGCTCTCTGCGGTTCGATGCCCTTGTGTATTGATCCGCGGGGATTGTTTGGTTAATGTTGTTCGGACTTGTTACAATGTGTATCTCGGTGGCTTGAGTGGTACGAATCAGATCTGTGCAAAATCCGTTCTAGGTCAAATAATGATCATTATTTTCAGTAGGATGGAGGAAGACTCCATGGATGTTCCTGCGAGTATAATTTCTGTGAATGAATTATTGGAATTTACCGACAAGAACTTGAATGAAGGCAATTCTATATATTTTTGCCAGAACTTTATTAATGAGGTAATGGATGCCAGCGAAGGGGTTGCGGATAAGAAACTATTTTCGAGTTGGGGACAATTGCAGAATGGCAATGCTTCGCCACTTAAAGCTGACAATAAAGGTGAATCCGATGTGGGAGAAACGGAAGATGTAGCCGAATCAGGTGGTTGTAGTAAGATTAGGGAGGATGGATTCCATTTGTTTAAGAATTTGTGTAAGTTGTCAATGAAATTCTCATCCCCGGAGCACCCAGATGATCAGATCCTCTTAAGGGGCAAAACACTGTCTCTGGAACTGCTAAAGGTGATTATGGATAAGGCAGGGTCAGTTTGGCGCCTTAACGAGAGGCAAGCATTTCATTCTTCATCGATCATTTTAGTGTTTCTCAATTCTATCAAGCAGTTTCTTTGCTTATCATTATTAAAAAACAGTGCCCTGTCGGCAATGGCCATCTTCCAGATTCAATGTTCTATTTTTATGAGCTTGTTGACAAAATTTAGATCAGGACTGAAAACAGAAATTGGTATCTTTTTTCCCATGCTTGTCCTCCGAGTGCTTGAGAATGTACTTCAGCCTAGTTTCTTGCAGAAAATGACCGTGCTCAATTTATTGGATAAGATATCTCAGGATTCACAGATTATGGTGGACATTTTTGTCAACTATGATTGTGATGTTGATTCTCCAAATATTTTCGAGAGGATTGTGAATGGCCTTTTGAAAACCGCTCTTGGACCGCCTTCTGGTTCAACCTCAACATTGTCTCCAGCGCAAGATATTACATTTAGGCATGAATCTGTTAAGTGTTTGGTAAGCATCATTAAATCAATGGGAACTTGGATGGACCAACAACTGAAGCTAGACGATACATATTTTCTCAAGACTACTGAGAGTGATGTTTCACTTGAGAATTGTTTAAGTGGGGAAGAAACAGCTGCTGTTGACTCTGAGCTCCATCCTGATGGAAATCCTGAGTTCTCAGATGCTGCTACACTTGAGCAACGCAGAGCTTACAAAATCGAGCTCCAGAAAGGTATTTCGCTGTTCAACAGGAAACCTTCCAGGGGTATTGAGTTTCTGATTAGCACAAAAAAAGTTGGTGGTTCTCCTGAAGAGGTGGCGTCTTTTCTCAAGAACACTAACGGCCTGAATGAAAGAGTCATTGGAGATTATTTGGGTGAAAGGGAGGAATTCCCTTTGAAAGTTATGCATGCTTATGTTGATTCATTTAATTTTAAAGCGATGGACTTTGGTGAAGCAATAAGGTTTTTCCTGCGAGGCTTCAGGTTACCAGGAGAGGCCCAAAAAATTGACCGTATCATGGAGAAGTTTGCTGAGCGGTACTGTAAATGTAGCCCTGGTTCATTCACAAGTGCAGATACTGCTTATGTTCTTGCTTATTCTGTTATTATGCTGAACACAGATGCTCATAATAACATGGTGAAAGATAAGATGACAAAAGCCGATTTTATCCGGAATAATCGAGGAATTGATGACGGCAAAGATTTACCTGATGAGTATCTGGGTGCTCTTTACGATCAGATTGTTAGGAATGAAATTAAGATGAATTCTGATTCTTCAGCTTCACAAAGTAAGCAGGCAACTAGCATCAACAAACTTTTGGGCTTAGATGGTATACTCAATCTAGTTTCTTGGAAGCAGACAGAAGAAAAAGCTGTGGGTGCAAACGGGCTTCTTATAAGGCACATACAGGAGCAGTTTAAGGCGAAGTCTGGAAAATCTGAGTCTGTTTATCACGCTGTGACTGATGTAACAATATTGAGGTTTATGGTGGAAGCCTGCTGGGGTCCTATGTTGGCGGCATTCAGTGTGACTCTTGACCAAAGTGATGATAAGCTTGCTACTTCTCAATGCTTACTTGGCTTTCGGTTTGCTGTACACGTTACAGCCGTTCTGGGTTTGCAGACTCAAAGGGATGCTTTCGTGACATCAATGGCTAAGTTTACCAATCTTCATTGTGCTGCCGATATGAAACAAAAAAATGTTGAAGCTGTGAAGGCTATAATTTCAATTGCCATAGAGGATGGTAATTTCCTTCAAGAGGCATGGGAGCACATATTTACATGTCTCTCTAGAATTGAGAACTTACAATTATTGGGAGAGGGTGCACCACCCGATGCGTCATTTTTGACATCATCCAATATTGAAACTGAAGAGAAAGTGCTGAAGTCGGCAGGTCTGTCATCTCTGAAGAAAAAGGGAGGTCTTCAAAATCCAGCTGTTATGGCTGTTGTTCGTGGAGGTTCATATGACAGCACCTCTCATGGAGCGAATACTCCAGGACTAGTAACTCCTGAACAGATTAACCATCTTATTTCGAACTTGAATTTGCTGGATCAAATAGGCAATTTTGAGTTGAACCACGTATTTGCTCATAGTCAAAGTTTGAACAGTGAAGCAATAGTAGCATTTGTGAAGGCCCTATGCAAAGTTGCTATTGCAGAATTGCAGCATTACAACATGAACCGCATCAGATTGGTGTGGTCTCGCATGTGGAGTGTTCTCTCTGATTTCTTTGTGTCAGTTGGCTTATCAGAGAATCTATCGGTTGCAATATTTGTGATGGATTCACTGAGGCAGCTTGCGATGAAGTTTTTGGAGCGTGAGGAGCTTGCAAATTATAACTTCCAGAATGAATTTCTGAGACCCTTCGTAATTGTTATGCAGAAAAGCAACTCCACGGAAATCAGGGAATTGATAGTTCGGTGCATTTCGCAAATGGTTCTCAGTCGTGTCAACAATGTGAAATCTGGATGGAAAAGTGTTTTTATGGTTTTCACTGCTGCTGCTGCTGATGAGCGGAAGAATATTGTCTTATTGGCTTTTGAAACGATGGAAAAAATAGTTCGAGAATATTTTCCTTATATAACAGAGACTGAAACTACAACATTTACCGATTGCGTTCGGTGTCTCATCACTTTCACAAATAGTAGATTTAACAGTGATGTCAGTCTCAATGCCATTGCGTTCCTTCGGTTTTGTGCTGTAAAGCTTGCAGAAGGGGGACTTGTTTGCTACGAGATGACTGGAGATAATGTTTCATCCAGTACTCCTGATGCACCCCCATCCATACCCGTACCCACAGATAAGGACGATTATGCTTCCTATTGGGTTCCTTTACTTGCAGGGCTATCAAAGTTAACTTCTGATCCTAGATCACCAATCAGAAAAAGTTCCTTGGAAGTACTTTTTAATATCCTAAAAGATCATGGCCATCTTTTCTCGCGTCAGTTTTGGGTTGGTGTTATCAATACCATAGTTTTCCCCATATTTAGTTCTTTGCATGACAAGAAAGAAATGGACGAGGATGAAAATGATGAATATTCAGAAGGAACTACATGGGATTCTGATACCTGTACAGTGGCAGCAGATTGTTTAGTAGATCTGTTCGTTAGCTTTTTCAATGTTATAAGGTCTCAACTACCCGGGGTGGTGTCGATTCTGACAGGATACATTAGGAGTCCGATCCAGGGTCCTGCCAGCACAGGTGTTGCTGCATTAATGCGCTTGGCGGGCGACTTGGGTAACAGGCTTTCCGAAGACGAATGGAGGGAGATTTTTCTTGCTTTGAAGCAAGCTGCCACATTAACCGTGCCTGGGTTTATGAAGGTCCTGAGAACCATGGATGACGTCAATGTTCTCGGGATCGCTCAATCTTATTATGATGTGGATGTTGCTTCTGATCAAGGTTTGTCGGCTGATGGTCTTGACGACGACGATCTGCAGATGGCGTCCTACATTGTTTCGAGGATGAAGAGTCATATCGCAATGCAACTCCTCATCATACAGGTCATTACTGATCTATACAAGAGCCATACCCAACCTTTCTCAGAAGCCAACATTTCCATCATTCTCGATATCTTCTCTTCCGTTGCCACACATTCCCAGAAACTGAATTCCAACACAGTCCTTCATAAGAAGCTACAGAAAGCTTGCTCCATCCTCGAGATTTCCGACCCACCCGTGGTTCACTTCGAAAACGAGTCGTATCGGAGCTACCTCAACTTCCTCCAGAATATGCTCGCAGACAGTCCTTCACTGACTAACGCAACTCTAGTAGAATCTGAACTCGTCGTAGTTTGCGAACAAATTCTGCATATTTACTTGAAGTGTACCGGGGCGCCAAGTGAGAAGAAAGAACCCAACCAGCCTGTGCTACATTGGATTCTTCCATTGGGGTCAGCAAAGAAGGAAGAGGTGGCTGCTCGAACATCTCTAGTAGTCTCGGCGTTGGAGGTTATCCGCGGGTTCGAAAGGGACCTATTTAAAAGGTGTGTTCAACGGCTTTTCCCATTGTTGGTAGATCTTGTTAGGAGTGAACATAGCTCTGGAGAAGTTCAGCTTGTTTTGAGCAGCATATTACAATCATGTATAGGCCCAATAATTATGCAATAA 5121 43.12 MSVSQALGGKSRCGRAIGPSLDKIVKNAAWRKHSHLVSSCKSVLDKLDSISEASLDPASPIAGLSPADAEFVLQPLLLALDAAYVKVAEPALECVFKLFSRGLFRGEIERPDGEANSGASSIVYRIVESVCKSGGLGDEGIELIVLRVLLSAVRCPCVLIRGDCLVNVVRTCYNVYLGGLSGTNQICAKSVLGQIMIIIFSRMEEDSMDVPASIISVNELLEFTDKNLNEGNSIYFCQNFINEVMDASEGVADKKLFSSWGQLQNGNASPLKADNKGESDVGETEDVAESGGCSKIREDGFHLFKNLCKLSMKFSSPEHPDDQILLRGKTLSLELLKVIMDKAGSVWRLNERQAFHSSSIILVFLNSIKQFLCLSLLKNSALSAMAIFQIQCSIFMSLLTKFRSGLKTEIGIFFPMLVLRVLENVLQPSFLQKMTVLNLLDKISQDSQIMVDIFVNYDCDVDSPNIFERIVNGLLKTALGPPSGSTSTLSPAQDITFRHESVKCLVSIIKSMGTWMDQQLKLDDTYFLKTTESDVSLENCLSGEETAAVDSELHPDGNPEFSDAATLEQRRAYKIELQKGISLFNRKPSRGIEFLISTKKVGGSPEEVASFLKNTNGLNERVIGDYLGEREEFPLKVMHAYVDSFNFKAMDFGEAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCSPGSFTSADTAYVLAYSVIMLNTDAHNNMVKDKMTKADFIRNNRGIDDGKDLPDEYLGALYDQIVRNEIKMNSDSSASQSKQATSINKLLGLDGILNLVSWKQTEEKAVGANGLLIRHIQEQFKAKSGKSESVYHAVTDVTILRFMVEACWGPMLAAFSVTLDQSDDKLATSQCLLGFRFAVHVTAVLGLQTQRDAFVTSMAKFTNLHCAADMKQKNVEAVKAIISIAIEDGNFLQEAWEHIFTCLSRIENLQLLGEGAPPDASFLTSSNIETEEKVLKSAGLSSLKKKGGLQNPAVMAVVRGGSYDSTSHGANTPGLVTPEQINHLISNLNLLDQIGNFELNHVFAHSQSLNSEAIVAFVKALCKVAIAELQHYNMNRIRLVWSRMWSVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIVMQKSNSTEIRELIVRCISQMVLSRVNNVKSGWKSVFMVFTAAAADERKNIVLLAFETMEKIVREYFPYITETETTTFTDCVRCLITFTNSRFNSDVSLNAIAFLRFCAVKLAEGGLVCYEMTGDNVSSSTPDAPPSIPVPTDKDDYASYWVPLLAGLSKLTSDPRSPIRKSSLEVLFNILKDHGHLFSRQFWVGVINTIVFPIFSSLHDKKEMDEDENDEYSEGTTWDSDTCTVAADCLVDLFVSFFNVIRSQLPGVVSILTGYIRSPIQGPASTGVAALMRLAGDLGNRLSEDEWREIFLALKQAATLTVPGFMKVLRTMDDVNVLGIAQSYYDVDVASDQGLSADGLDDDDLQMASYIVSRMKSHIAMQLLIIQVITDLYKSHTQPFSEANISIILDIFSSVATHSQKLNSNTVLHKKLQKACSILEISDPPVVHFENESYRSYLNFLQNMLADSPSLTNATLVESELVVVCEQILHIYLKCTGAPSEKKEPNQPVLHWILPLGSAKKEEVAARTSLVVSALEVIRGFERDLFKRCVQRLFPLLVDLVRSEHSSGEVQLVLSSILQSCIGPIIMQ 1706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6614974 6624560 + Cp4.1LG04g04440.1 Cpe04g00646 468208

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00646 1706 Gene3D - 648 768 IPR023394 -
Cpe04g00646 1706 Gene3D - 559 647 - -
Cpe04g00646 1706 Pfam BIG2 C-terminal domain 1499 1697 IPR046455 -
Cpe04g00646 1706 ProSiteProfiles SEC7 domain profile. 566 753 IPR000904 GO:0005085|GO:0032012
Cpe04g00646 1706 Pfam Dimerisation and cyclophilin-binding domain of Mon2 15 206 IPR032629 -
Cpe04g00646 1706 SUPERFAMILY ARM repeat 1033 1698 IPR016024 -
Cpe04g00646 1706 Pfam Domain of unknown function (DUF1981) 1106 1188 IPR015403 -
Cpe04g00646 1706 Pfam Sec7 domain 574 755 IPR000904 GO:0005085|GO:0032012
Cpe04g00646 1706 SMART sec7_5 570 755 IPR000904 GO:0005085|GO:0032012
Cpe04g00646 1706 Gene3D - 1096 1320 IPR011989 -
Cpe04g00646 1706 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 9 1700 - -
Cpe04g00646 1706 SUPERFAMILY Sec7 domain 570 761 IPR035999 GO:0005085|GO:0032012
Cpe04g00646 1706 CDD Sec7 573 755 IPR000904 GO:0005085|GO:0032012
Cpe04g00646 1706 PANTHER BREFELDIN A-INHIBITED GUANINE NUCLEOTIDE-EXCHANGE PROTEIN 4 9 1700 - -
Cpe04g00646 1706 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 298 466 IPR032691 -
Cpe04g00646 1706 Pfam C-terminal region of Mon2 protein 1266 1342 IPR032817 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00646 K18442 ARFGEF, BIG; brefeldin A-inhibited guanine nucleotide-exchange protein - csv:101212521 2933.67
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00646 Cpe15g00658 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01685 Cpe-Chr3:12830129 Cpe04g00646 Cpe-Chr4:6614974 0 dispersed
Cpe04g00646 Cpe-Chr4:6614974 Cpe08g00490 Cpe-Chr8:3150565 0 dispersed
Cpe15g00658 Cpe-Chr15:7243059 Cpe04g00646 Cpe-Chr4:6614974 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g315 . . . . . Bpe12g00159 . . . Cmo11g01803 . . . . Sed05g2136 Cpe04g00646 Cpe15g00658 Bhi05g01542 Tan02g0540 Cmetu01g0851 Lac12g0438 Hepe02g0345 . . . . . . . . . . . . . . Csa07g00216 . . . Blo13g00462 . . . . . . . . . Cma11g01317 Cma19g00818 Car11g01430 Car19g00635 . . . . . . . . . . . . . . . . Lsi11g01311 . Chy01g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010065 0 1 1 0 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00646 Cpe_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0