Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00657 ATGGGCCTCTCCAGTCTCCCAGCTCCATCTGAAGGAGTCTTTAATGTTCTTGTAAACACTGCACTATCATTTTCCATGTTCAAATGCTTTGTTCGTTTGATCCTTCAAGTCGTAGGAATCCTTCTCTCACCACCATCCTTGGCTCCACCATCAGATTCCTTGGAAAATTCCTCAGAGTTGGGGGATTCCAATTTTGGTTCTTCTTGGAATTACATCGAGACGTTTCAGAACCGATATCCAACGATTAAGTTTGCTAAAGTAGAGGACTCCAAATGTCATGAACATGACTGCCCTGTTTGCTTAACTTGGTTCGAACCTGAATCGGAGATAAACCGCTTATCTTGTGGCCATCTTTTTCACACATTGTGCTTGAAGAAGTGGCTGGACTACTTGAACATTACATGTCCTCTTTGCAGAACTCCTCTTATGTCCGAAGAAGAGAAATTGTGCTTTTGGAGTATGCAAAGTAGTGTGTGGACTATTGAAGCTGATTTAGAAGCTGCTCAGCTTCTTTACCTTACTGGGGATCCTGTCGCCTTAGGCTTCTGGGAACCAAACATGGCTATGCAAATGTCTCCTATGGAACATGCTAACTTATGGATGGCTGAAGATGACACAAGCCGCAGAGTGGTCTGCACCTTTCATGTAGTAGTAGTACTCACTTCAAGCAAACAGTAG 678 43.51 MGLSSLPAPSEGVFNVLVNTALSFSMFKCFVRLILQVVGILLSPPSLAPPSDSLENSSELGDSNFGSSWNYIETFQNRYPTIKFAKVEDSKCHEHDCPVCLTWFEPESEINRLSCGHLFHTLCLKKWLDYLNITCPLCRTPLMSEEEKLCFWSMQSSVWTIEADLEAAQLLYLTGDPVALGFWEPNMAMQMSPMEHANLWMAEDDTSRRVVCTFHVVVVLTSSKQ 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6701276 6705943 - Cp4.1LG04g04230.1 Cpe04g00657 468219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00657 225 SUPERFAMILY Starch-binding domain-like 158 215 IPR013784 GO:0030246
Cpe04g00657 225 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 152 - -
Cpe04g00657 225 PANTHER - 1 152 IPR044249 -
Cpe04g00657 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 144 IPR013083 -
Cpe04g00657 225 Pfam Ring finger domain 96 139 IPR001841 -
Cpe04g00657 225 SMART ring_2 97 138 IPR001841 -
Cpe04g00657 225 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Cpe04g00657 225 SUPERFAMILY RING/U-box 88 144 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00657 Cpe15g00675 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00657 Cpe-Chr4:6701276 Cpe05g01385 Cpe-Chr5:9746425 9.62E-60 dispersed
Cpe15g00676 Cpe-Chr15:7363756 Cpe04g00657 Cpe-Chr4:6701276 3.36E-20 transposed
Cpe15g00675 Cpe-Chr15:7360788 Cpe04g00657 Cpe-Chr4:6701276 1.89E-80 wgd
Cpe16g00361 Cpe-Chr16:5310864 Cpe04g00657 Cpe-Chr4:6701276 1.52E-59 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00657 K16285 - csv:101215605 236.113