Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00659 ATGGGTTACTTATGTGATTTCTGTGGGCATCAAAGGTCGATTGTTTACTGTCGATCCGACTCTGCAGCTTTGTGCTTATCTTGTGACCGTAATGTTCACTCTGCTAATGCCCTGTCGAGGCGCCACTTGAGGACGTTGTTATGTGATAGGTGCCATTCACAAGCTGCATTTGTTAGATGTCCTGAAGAGAATATTTCACTTTGTCAAAATTGTGATTATATGGGGCATAGCTCATCTGCCTCCATTTCGTCCCGAAAGAGGCAACCAATCAATTGTTTCTCAGGATGCCCGACTGCTGCAGAACTCTCATCTATCTGGTCGTTTGTTCTAGATCTCCCTTCTGTTGGCGATGCTTGTGAACAAGAATTAGGATTGATGAGCATTGCTGAAAATAGTGCAGTAAATGCCTGGGGCCCTGATGATCAAGCTGGTCAAAATGTATCTGGTGCAGATCAAACCAATGAATTCTCAAATGAGGATAGATCAATTTGGTATGGCTCCTCTTCAATGCCTCAATATCCATCCAAGCCTCACGTCATGGACCAACCAATGACGATAGATGCAACTTCACCCAAGTTGCACTGTGCTGGAACAAAAGGTCCTGGACTCGATATTGAAGATGACCTCTACGAGAATTTGAATATGGATGAAGATAGTTTGAATCTTGAAAACTATGATGAACTATTTGGTGTATCTCTCAGTTTTTCTGAAGAATTGCTAGAGAATGGTGGTATTGATAGCTTGTTTAGGATGAAAAGCCTATCCGCCGCAAAATCTGGTTGCACTGGTGTGCCTGCAGCAGAGGGAGCGTCCGTTGGTTTAGTTAATAATACGATGCGTCCAGCGAGCAGTAATGCAGCATCTGCAGATTCCATGATGAGTGCGAAGACTGAACCGATTCTCTGTTATAACAATAAGCAAGAGCACTCCAGCCTATCATTTTCTGGCATGACTGGAGAGAGTAGCGCAGGCGAACCTCAAGACTGTGGAGCTTCACCAATGCTTCTAATGGGAGAGCCTCCTTGGTGTTCTATGGCCACTGAGAGTTCCTTCCAGTCATCTAATCGTAGCGATGCCGTAATGCGTTACAAGGAAAAGAAGAAAGCTCGAAAGTTTGAAAAGAAGGTGAGGTACGCTTCTCGCAAAGAGAGGGCCGATATTAGAAGGCGTGTCAAGGGGCGCTTTGTTAAAGCTGGAGAAGCGTATGACTATGATCCACTGAATCAAACCAGAAGCTACTGA 1242 44.69 MGYLCDFCGHQRSIVYCRSDSAALCLSCDRNVHSANALSRRHLRTLLCDRCHSQAAFVRCPEENISLCQNCDYMGHSSSASISSRKRQPINCFSGCPTAAELSSIWSFVLDLPSVGDACEQELGLMSIAENSAVNAWGPDDQAGQNVSGADQTNEFSNEDRSIWYGSSSMPQYPSKPHVMDQPMTIDATSPKLHCAGTKGPGLDIEDDLYENLNMDEDSLNLENYDELFGVSLSFSEELLENGGIDSLFRMKSLSAAKSGCTGVPAAEGASVGLVNNTMRPASSNAASADSMMSAKTEPILCYNNKQEHSSLSFSGMTGESSAGEPQDCGASPMLLMGEPPWCSMATESSFQSSNRSDAVMRYKEKKKARKFEKKVRYASRKERADIRRRVKGRFVKAGEAYDYDPLNQTRSY 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6710458 6714670 - Cp4.1LG04g04180.1 Cpe04g00659 468221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00659 413 CDD Bbox1_BBX-like 4 47 - -
Cpe04g00659 413 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 413 - -
Cpe04g00659 413 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cpe04g00659 413 ProSiteProfiles CCT domain profile. 356 398 IPR010402 GO:0005515
Cpe04g00659 413 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cpe04g00659 413 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Cpe04g00659 413 Pfam CCT motif 356 398 IPR010402 GO:0005515
Cpe04g00659 413 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 413 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00659 Cpe05g01383 CCT
Cpe04g00659 Cpe15g00673 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01212 Cpe-Chr3:9897821 Cpe04g00659 Cpe-Chr4:6710458 1.41E-07 dispersed
Cpe04g00659 Cpe-Chr4:6710458 Cpe16g00455 Cpe-Chr16:5785162 4.99E-65 dispersed
Cpe05g01383 Cpe-Chr5:9738572 Cpe04g00659 Cpe-Chr4:6710458 1.32E-164 transposed
Cpe15g00673 Cpe-Chr15:7348210 Cpe04g00659 Cpe-Chr4:6710458 0 wgd
Cpe16g00362 Cpe-Chr16:5315133 Cpe04g00659 Cpe-Chr4:6710458 1.69E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49358 PF06203 CCT 9.50E-16 CL0281 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00659 - - csv:101216326 721.079