Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00668 ATGATTCTGTGTAAGAGAGATTCAAGTACCTTGGTTGCTGTTCTTGTGGCTTGTGTGGTATTGCTCTTTGGAGCTGTGAGCAGTCAACCGAGCCTTGAGCCTCGTTTTGCCTATGTTGGATTCAATGAAAGGGAGCACAACCAAGACTTCTCCTTCACTCAAGGGTCGTCTTCCATCGATGAGGGCGCCCTGCAGCTAACTCCCGACTCGCAGAACGATATTGTTCGCCTTCAAAATACGTCTGGCCGGATTATGTACCACCAGCCATTCAAGTTATGGCTAGATGAAGAGGGAGATGACATTGTTGCTTCTTTCAACTCATACTTTTACATCAATATTTTCAGAAAGAAAGAATGGAATGCCGGTGAGGGGCTTACTTTTCTTATAGCTCCGACTGCTGATGTACCTGATCAGAGCTGGGGGCAGTGGATGGGCCTCACCAATGCAACTACCGATGGCAGCAGCACAAACCAAATTGTAGCCATTGAATTTGATACCCAGAAGCAGGATTTCGACCCCGACGACAACCATATCGGTCTGAACGTCAACTCCATTCGATCAAGGAAGACTGTATCCTTGAATAAAGCTGGCATAGTTTTATCCCCAGAGATTGGAACCAATTACAGCATCTGGGTTGTTTATGATGGAATATCCAAACTTTTGCAGGTTTACATGTCTGCAAACAAAGATCCAAAACCTGATAAACCTCTTCTCAATGAAACAATAAACCTCAAACAGTATGTGAAACAAGAATCATACATTGGATTTTCTGCTTCCACAGGCAGCCCGGAAATTCAGTTGAACTGTGTCTTGGAATGGATGCTGGATTTGGAACATCTGCCAGAGAAGAAAAATCTAATTTGGTTGAAGATCCTTGCCGGGGTTGGAATCCCGATACTAACGATCGTGATTCTGATTGGGGTTTGGTTATTTGTTGGTTATATGAAGAGGAGAAGAGTGAGCAGGGACGAGGAGTCGAATGTTCAGGGCACGCTGAAGAGGTTGCCGGGAATGCCGAGAGAGTTCAAGTACAAGGAACTACGGAAGGCGACTCATAACTTCCATGAAAGCATGGTTCTGGGAAATGGAGGCTTCGGGGTTGTTTACAAAGGGATTCTAGAAGAAAAGGATAAGGACTTCACTGCATCATCAAGTTCTGTTGCCAGGCTTGAAGTTGCTGTCAAGAAATTCTCCAGGGACAGCATTAAGAGCAAAGGCGATTTTCTGGACGAGCTCACCATTATTCACCGTCTTCGCCACAGGAACCTCGTCCGTTTAGAAGGAAGGGCGACTCCAGAATCCGACGTATATGGTTTTGGGGCAGTGGTGCTTGAGATTGTTTGTGGCAGGAGACCAGGAGCTCCTGTGGAAGACGAGCAACATCAATATACCTTAGTTGATTGGGTGTGGAAGGTACACCGCGAAGGACATATCGAAAAAGCAGTCGATAACCAGCTCGGTGATGATATTGTCGTCGATGAAGCTAGGAGGCTTCTACTACTTGGGTTGGCATGTTCACATCCCATGGCAAGTGAACGGCCACAAACTCAGGATATACTCCAAATTTTAAATGGAGCTTTGCCTGCACCTCGTGTACCTCCATTCAAGCCAGTCTTCATGTGGCCTCCCATGATGAACACTACCTCCTCCACCAGTAACAATCTCAGTTCACTGTCAAACACAAATAACTCTCTTTGA 1698 45.88 MILCKRDSSTLVAVLVACVVLLFGAVSSQPSLEPRFAYVGFNEREHNQDFSFTQGSSSIDEGALQLTPDSQNDIVRLQNTSGRIMYHQPFKLWLDEEGDDIVASFNSYFYINIFRKKEWNAGEGLTFLIAPTADVPDQSWGQWMGLTNATTDGSSTNQIVAIEFDTQKQDFDPDDNHIGLNVNSIRSRKTVSLNKAGIVLSPEIGTNYSIWVVYDGISKLLQVYMSANKDPKPDKPLLNETINLKQYVKQESYIGFSASTGSPEIQLNCVLEWMLDLEHLPEKKNLIWLKILAGVGIPILTIVILIGVWLFVGYMKRRRVSRDEESNVQGTLKRLPGMPREFKYKELRKATHNFHESMVLGNGGFGVVYKGILEEKDKDFTASSSSVARLEVAVKKFSRDSIKSKGDFLDELTIIHRLRHRNLVRLEGRATPESDVYGFGAVVLEIVCGRRPGAPVEDEQHQYTLVDWVWKVHREGHIEKAVDNQLGDDIVVDEARRLLLLGLACSHPMASERPQTQDILQILNGALPAPRVPPFKPVFMWPPMMNTTSSTSNNLSSLSNTNNSL 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6758315 6761046 - Cp4.1LG04g04210.1 Cpe04g00668 468230

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00668 565 Gene3D - 33 289 - -
Cpe04g00668 565 SMART tyrkin_6 354 523 IPR020635 GO:0004713|GO:0006468
Cpe04g00668 565 SUPERFAMILY Protein kinase-like (PK-like) 339 552 IPR011009 -
Cpe04g00668 565 Pfam Legume lectin domain 35 284 IPR001220 GO:0030246
Cpe04g00668 565 PANTHER - 10 428 - -
Cpe04g00668 565 Gene3D Transferase(Phosphotransferase) domain 1 431 527 - -
Cpe04g00668 565 Pfam Protein tyrosine and serine/threonine kinase 358 431 IPR001245 GO:0004672|GO:0006468
Cpe04g00668 565 Gene3D Phosphorylase Kinase; domain 1 313 430 - -
Cpe04g00668 565 ProSiteProfiles Protein kinase domain profile. 354 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g00668 565 PANTHER - 427 558 - -
Cpe04g00668 565 SUPERFAMILY Concanavalin A-like lectins/glucanases 39 289 IPR013320 -
Cpe04g00668 565 CDD lectin_legume_LecRK_Arcelin_ConA 36 273 IPR001220 GO:0030246
Cpe04g00668 565 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.5-RELATED 10 428 - -
Cpe04g00668 565 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.5-RELATED 427 558 - -
Cpe04g00668 565 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00668 - - - cpep:111792914 844.343
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00668 Cpe15g00663 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00668 Cpe-Chr4:6758315 Cpe08g01172 Cpe-Chr8:8690103 1.89E-09 dispersed
Cpe15g00663 Cpe-Chr15:7275759 Cpe04g00668 Cpe-Chr4:6758315 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g321 . . . . . . . . Cmo19g00842 Cmo11g01827 . . . . . Cpe04g00668 Cpe15g00663 Bhi05g01535 . . . . . . Cla02g00321 . . . . . . Cone12ag1284 Cone8ag1348 . . . Csa07g00223 . . . Blo13g00458 . . Bpe15g00769 . Bma03g00652 Bma08g00704 . . . Cma11g01293 Cma19g00825 Car11g01453 Car19g00640 . . . . . . . . . . . . . . . . Lsi11g01317 . Chy01g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006270 1 1 1 3 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62343 PF00139 Lectin_legB 1.70E-65 CL0004 Cpe PK