Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00672 ATGGCCACCTCTGCTATCCAGCAATCCGCCTTTGCCGGCCAGACTGCCTTGAAGCAATCCAATGAGCTCGTCCGAAAGGTCGGCGCTTTCGGTGGCAGCCGCTTCACCATGCGGCGGACGGTCAAGAGTGCTCCTCAAAGCATATGGTATGGTCCAGATCGCCCAAAATACTTGGGACCCTTCTCTGAACAAACACCATCCTACCTGACTGGAGAGTTCCCTGGTGACTACGGCTGGGACACAGCCGGTCTATCAGCAGACCCCGAGACTTTCGCCAAGAACCGTGAGCTCGAGGTGATCCACTCCAGATGGGCCATGCTCGGTGCATTAGGCTGCGTCTTCCCTGAAGTCCTTGCAAAGAATGGTGTCAAGTTCGGTGAATCAGTCTGGTTCAAGGCCGGTTCACAGATCTTCTCCGAAGGTGGCCTCGATTACCTTGGCAACCCAAACCTCGTCCACGCACAGAGCATCCTAGCCATCTGGGCTTGCCAGGTTGTGCTGATGGGGTTCGTGGAAGGCTACCGGGTTGGGGGCGGTCCCCTTGGTGAAGGGCTGGACCCAATCTACCCAGGAGGGGCGTTCGACCCACTGGGATTGGCGGATGACCCAGATGCCTTTGCTGAGTTGAAAGTGAAGGAGCTGAAGAATGGAAGGCTGGCAATGTTCTCCATGTTTGGATTCTTCGTGCAGGCTATTGTCACTGGAAAGGGTCCTATTGAGAATCTGTTCGACCATGTTGCAGACCCTGTTGCCAACAATGCTTGGGCTTATGCCACCAACTTCGTCCCCGGAAAATGA 798 55.51 MATSAIQQSAFAGQTALKQSNELVRKVGAFGGSRFTMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEVLAKNGVKFGESVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6780729 6783099 + Cp4.1LG04g04040.1 Cpe04g00672 468234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00672 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Cpe04g00672 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Cpe04g00672 265 Pfam Chlorophyll A-B binding protein 66 231 IPR022796 -
Cpe04g00672 265 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 2.1, CHLOROPLASTIC-RELATED 1 265 - -
Cpe04g00672 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 265 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00833 Cpe-Chr1:4941837 Cpe04g00672 Cpe-Chr4:6780729 2.09E-126 dispersed
Cpe04g00672 Cpe-Chr4:6780729 Cpe16g00726 Cpe-Chr16:7382116 4.69E-151 dispersed
Cpe04g00672 Cpe-Chr4:6780729 Cpe02g01544 Cpe-Chr2:13109098 6.56E-152 transposed
Cpe04g00672 Cpe-Chr4:6780729 Cpe19g01123 Cpe-Chr19:7560916 7.73E-152 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00672 K08913 - csv:101212963 542.347