Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00676 ATGTCTCAAAATTCTAAGTTATCTTGTTCCAATGTCATATTACCTGCTGGGTTGAAGGCGAAGAGGGCTAGGGAGCATTTCCATGGCCAACGGTGGAGTAATCTTCTTTATCTCTTGCCATTTGGCGTCATTTTGATTGTGGGTCTTTGGTATATTTTGAGTCTTTGTGATGGGAATTCTGCTCGGGAAGTGGAGATTCCTGATACGTGTAAAGAGAAGGCTTGGAACTTGCTGAAGCATTACAATGTTAGTGAGAGTCAGTTTCATGCTTTGGCTTCGTTCTTCTTTCATTCAGATCAGGCAGCATCTCTTCAGTGTGCTGAAGACCCAGGGCCTGGTATTGGCCTGAAAGAATGCATAGCTTGCGCTTTGAAGATGCTAGAAGAGGAGCTAAACTTGCAAAAGCAGCGTGGGTGGCTTTCTGAAAATTTACAACCTGAAGGCCAGTGCCCAATTAGGGGTGAGATGGATTCCTTCAATAATGATCTGTTGCAGTTAGTGGACAAGACACGCTCACTTACTTCACAATCTTCTTTTGCTTTTGTGTCTCCTTGTCATCAGATTCATAGAGAGAAGATCTTGCATTCTAAGGAAATTGGAAACGAGCCTTCGCGAAGTTTGAACGGATTAGTAATGGCGTGTTTATGGATCCTTGCTGTAGTGATATCATGTCTGAAGATGTCTAGTTTTCATTTGAAACTAAGGAACCATAAGCATAAACCAATAAAGCATCCCTCGGTCGAGAAGCAGCCAATGATTCAACTGCAGCAAGTGTTGCTACAGAAGAAGCAGTTAGATCTATCTCCAAGTCCTCCTAAAGGGGCTGGAAAATGGAGAAAGAAGCTTCTTATAATATTTGTTTTACTTGGAGTTATTGGATCCTTTTGGCTCTTTTGGTATTTAAACAACAAAATCATCTTGAGGAGAGAAGAAACACTTGCGAACATGTGTGATGAGCGAGCTCGAATGTTACAGGATCAATTCAACGTTAGCATGAACCATGTTCATGCCTTGGCTATTCTGGTCTCCACTTTTCACCATGGCAAGCATCCTTCTGCCATTGATCAGAAAACATTCAGTGAATATGCAGAAAGAACATCTTTTGAGCGACCACTAACCAGTGGCGTGGCGTATGCTTTGAAAGTTAACCATTCAGAAAGAAATCAATTTGAAGAGGAACACGGGTGGACAATTAAGAAGATGGGAACAGAGGACCAGACTCTTGTTCAGGATTGTATTCCTGAGAATTTGGATCCTGCTCCCTTTCAGGATGAATATGCCCCTGTCATATTTTCACAAGAAACTGTATCACATATAGTTTCCATCGACATGATGTCGGGAAAGGAAGACCGCGAAAACATCTTACGAGCAAGGGCTTCGGGGAAGGGAGTACTGACATCGCCTTTCAAGCTTCTTAAGTCCAATCACCTAGGTGTTGTACTCACTTTTGCTGTCTATAACACTGACCTTCCTCCTGATGCAACACCAGAGCAACGTACTGAAGCTACTGTTGGGTATCTCGGAGCATCCTATGATGTTCCATCACTGGTGGACAAGCTTCTGCACCAACTTTCCAGCAAACAATCAATTGTTGTTGATGTTTATGATACAACTAATGCATCTGGTCCCATCAAGATGTATGGTTCTGATGTGGTTGATACTGGTCTATTGCACATTAGCAACCTGGATTTTGGAGACCCTCAAAGGAAGCATGAGATGCATTGCAGATTTAAGCAGATGCCTCAATTACCATGGATGGCTATAAATGCATCAGTGGGAGTTCTTGTTATTACTTTACTCGTTGGACATATATTTTATGCGGCGATAAGTCGAATCGCAAAAGTGGAGAATGACGTTCGTGAGATGATGAAACTCAAAACTCGTGCTGAAGCTGCAGATGTGGCAAAGTCTCAGTTTCTTGCTACTGTTTCTCATGAGATCAGGACGCCAATGAATGGTGTTTTAGGGATGCTGAAAATGCTGATGGACACTGATCTTGACCCAAACCAACAGGACTATGCCCAAACTGCATATGATAGTGGGAAAGAATTGATATCACTAATAAATGAGGTTCTTGATCAAGCTAAAATAGAATCAGGCAGGCTTGAACTCGAAGATGTACCGTTCGATCCTCGAGCTTTACTGGATAATGTGCTGTCGATGTTCTCTGGAAAATGCCATGAAAAGGGGATAGAGTTAGCTGTTTATGTCTCTAATCTAGTCCCGGAAGTCCTCATTGGCGACCCGGGACGCTTTCGGCAGATAATCACCAATCTTGTGGGAAATTCGATCAAGTTCACCAACGACAAAGGACATATATTCGTTACCGTGCACCTAGCAGACGAACTGAAGACTCCGCTTGATGCGATGGACAGCGTGCTAAGACAAGGCTTAGATTTAGTAAAAGATACGTCGAAAAAAAGTCATAATACATTAAGCGGGTTTCCAGTTGTTGAAAGGTGCAAGAGTTGGGAGCATTTCGAGATATTTAGTAGAACGGATGCGATGAAGGAAGACGACTTAATTAAATTGCTTGTATCGGTCGAGGATACAGGCCATGGAATTCCTTTAGAAGCACAAAGTCGAATCTTTACGCCTTTTATGCAAGCTGATAGTTCGACTTCGCGTAAGTATGGTGGGACTGGAATAGGACTGAGCATCAGCAAATGTCTGGTGGAACTAATGGGTGGAGAGATAGGTTTTGTGAGCCATCCTAGTGTTGGCAGCACATTTTCGTTTACTGGATGTTTGAGAAAAGGCGATACAAGGTCTCTCGATACAAAGTGGCAGCAGAACGATCCAACCGTATTGGATTTCCGAGGACTGCAAGCGTTGGTAATAGATAATAGAAGCATTAGAGCTGAGGTAACAAAATATCATCTCAAGAGGTTAGGGATCTCGGTAGATATAGTTTCGAGTCTGGTTTCAGCGCACGAATACGTAAAGAACAATTGCATCAAAAGTCCATCCAAGTCATTGGCCATGGTGCTTATCGACAAAGATGTATGGGATAACCAAACCGGTCCGATGATCGCTCGTGTATTTGAAGAACATGGGGTAAATGGCAAAGAAGAATCAACACGAAGTCCTAAGATCTTTCTCTTGGCTACCTCTGATCTTCAAGAGACGAGAGCTCTGAAGTCGACCGGTTATATTAGTAATGTAATGACGAAACCCCTTAGGTTGGGTGTCTTGATCGGATGCTTCCAGGAAGCTTTCGGGAAGGTAAATCGAAAGAAGCCGTCGATTCTCGGGAACTTACTGAGAGATAAGCAAATACTGGTGGTCGATGACAATGCCGTTAATAGACGAGTCGCAGAAGGCGCTCTAAAGAAATATGGAGCCAAGGTTACCTGTGTGGAAAGTGGTAGAGCTGCTATTTCCTTGTTGAAACCACCACACAAGTTCCATGCCTGCTTCATGGATCTTCAGATGCCTGAGATGGACGGTGATATGTTTGGGAATGTGGCTGTTTGGCATACACCAGTGTTGGCCATGACAGCTGATGTGATTCAGGCTACAAGTGAAGCATGCATGGCCTGCGGGATGGATGGTTATGTCGCAAAGCCTTTCGAAGAAGAAAAATTATATTCAGCTGTAGCTAGATTCTTCGAGTCTGATGGCGGGACTAGAATATGA 3639 43.28 MSQNSKLSCSNVILPAGLKAKRAREHFHGQRWSNLLYLLPFGVILIVGLWYILSLCDGNSAREVEIPDTCKEKAWNLLKHYNVSESQFHALASFFFHSDQAASLQCAEDPGPGIGLKECIACALKMLEEELNLQKQRGWLSENLQPEGQCPIRGEMDSFNNDLLQLVDKTRSLTSQSSFAFVSPCHQIHREKILHSKEIGNEPSRSLNGLVMACLWILAVVISCLKMSSFHLKLRNHKHKPIKHPSVEKQPMIQLQQVLLQKKQLDLSPSPPKGAGKWRKKLLIIFVLLGVIGSFWLFWYLNNKIILRREETLANMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQKTFSEYAERTSFERPLTSGVAYALKVNHSERNQFEEEHGWTIKKMGTEDQTLVQDCIPENLDPAPFQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTDLPPDATPEQRTEATVGYLGASYDVPSLVDKLLHQLSSKQSIVVDVYDTTNASGPIKMYGSDVVDTGLLHISNLDFGDPQRKHEMHCRFKQMPQLPWMAINASVGVLVITLLVGHIFYAAISRIAKVENDVREMMKLKTRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKMLMDTDLDPNQQDYAQTAYDSGKELISLINEVLDQAKIESGRLELEDVPFDPRALLDNVLSMFSGKCHEKGIELAVYVSNLVPEVLIGDPGRFRQIITNLVGNSIKFTNDKGHIFVTVHLADELKTPLDAMDSVLRQGLDLVKDTSKKSHNTLSGFPVVERCKSWEHFEIFSRTDAMKEDDLIKLLVSVEDTGHGIPLEAQSRIFTPFMQADSSTSRKYGGTGIGLSISKCLVELMGGEIGFVSHPSVGSTFSFTGCLRKGDTRSLDTKWQQNDPTVLDFRGLQALVIDNRSIRAEVTKYHLKRLGISVDIVSSLVSAHEYVKNNCIKSPSKSLAMVLIDKDVWDNQTGPMIARVFEEHGVNGKEESTRSPKIFLLATSDLQETRALKSTGYISNVMTKPLRLGVLIGCFQEAFGKVNRKKPSILGNLLRDKQILVVDDNAVNRRVAEGALKKYGAKVTCVESGRAAISLLKPPHKFHACFMDLQMPEMDGDMFGNVAVWHTPVLAMTADVIQATSEACMACGMDGYVAKPFEEEKLYSAVARFFESDGGTRI 1212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6801950 6812166 + Cp4.1LG04g04130.1 Cpe04g00676 468238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00676 1212 Coils Coil 612 632 - -
Cpe04g00676 1212 Pfam His Kinase A (phospho-acceptor) domain 635 700 IPR003661 GO:0000155|GO:0007165
Cpe04g00676 1212 Gene3D CHASE domain 354 580 IPR042240 -
Cpe04g00676 1212 PRINTS Bacterial sensor protein C-terminal signature 862 872 IPR004358 GO:0016310|GO:0016772
Cpe04g00676 1212 PRINTS Bacterial sensor protein C-terminal signature 879 897 IPR004358 GO:0016310|GO:0016772
Cpe04g00676 1212 PRINTS Bacterial sensor protein C-terminal signature 844 858 IPR004358 GO:0016310|GO:0016772
Cpe04g00676 1212 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 620 701 IPR036097 GO:0000155|GO:0007165
Cpe04g00676 1212 Gene3D - 301 353 - -
Cpe04g00676 1212 Gene3D - 57 103 - -
Cpe04g00676 1212 ProSiteProfiles Response regulatory domain profile. 1092 1204 IPR001789 GO:0000160
Cpe04g00676 1212 CDD REC_hyHK_CKI1_RcsC-like 1093 1200 - -
Cpe04g00676 1212 CDD HisKA 635 696 IPR003661 GO:0000155|GO:0007165
Cpe04g00676 1212 Pfam CHASE domain 353 547 IPR006189 -
Cpe04g00676 1212 ProSiteProfiles Response regulatory domain profile. 943 1073 IPR001789 GO:0000160
Cpe04g00676 1212 SMART HKATPase_4 747 919 IPR003594 -
Cpe04g00676 1212 PANTHER TWO-COMPONENT HISTIDINE KINASE 269 1206 - -
Cpe04g00676 1212 ProSiteProfiles Histidine kinase domain profile. 642 919 IPR005467 -
Cpe04g00676 1212 SMART HisKA_10 635 700 IPR003661 GO:0000155|GO:0007165
Cpe04g00676 1212 Gene3D - 607 698 - -
Cpe04g00676 1212 SUPERFAMILY CheY-like 938 1074 IPR011006 -
Cpe04g00676 1212 Gene3D - 1086 1207 - -
Cpe04g00676 1212 Gene3D - 936 1078 - -
Cpe04g00676 1212 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 689 914 IPR036890 -
Cpe04g00676 1212 SMART CHASE_2 350 549 IPR006189 -
Cpe04g00676 1212 SUPERFAMILY CheY-like 1089 1204 IPR011006 -
Cpe04g00676 1212 PANTHER HISTIDINE KINASE 2 269 1206 - -
Cpe04g00676 1212 Gene3D - 699 919 IPR036890 -
Cpe04g00676 1212 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 747 914 IPR003594 -
Cpe04g00676 1212 CDD HATPase_EvgS-ArcB-TorS-like 752 917 - -
Cpe04g00676 1212 Pfam Response regulator receiver domain 1093 1200 IPR001789 GO:0000160
Cpe04g00676 1212 ProSiteProfiles CHASE domain profile. 350 574 IPR006189 -
Cpe04g00676 1212 SMART REC_2 1091 1200 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00676 Cpe-Chr4:6801950 Cpe13g00429 Cpe-Chr13:4620451 0 dispersed
Cpe06g00274 Cpe-Chr6:1503597 Cpe04g00676 Cpe-Chr4:6801950 2.25E-44 dispersed
Cpe16g00390 Cpe-Chr16:5476764 Cpe04g00676 Cpe-Chr4:6801950 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49360 PF03924 CHASE 5.50E-36 CL0165 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00676 K14489 - tcc:18612437 1540.4