Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00677 ATGGTTTCTTCAGGGGACCAAATAGAGACTAAAGTTGATTCTGATAGATTGGAGCATGAACAAAGTTCATTTAGCCAAGCGCAAGCGTCTCAGGAGGATCCTGGTGGAACAAATGCATCAAACTCTGATCACAAAAACACTGCAGCTTCCAGGGAGACACTTGAAGAGGCTGTTAAGCAGCCTGACGTTACAATCCCACTAGTGGATCGAGGAGATATCTCTAATACAGTTGCTGAGAAAGTGACCCAGAACCCAATTCATGCGGATCAGGACTCGCATCCTGACTTGAAAGTAAGTATCACCTCTACAATACGAGAGAAAGTGTCAGAGGATGGATATAACTGGCGAAAGTATGGTCAGAAACTAGTAAAAGGAAATGTCTTTGTTAGAAGCTATTACAGATGCACGCATCCAACTTGCATGGTGAAAAAACAACTGGAGCGCACTCATGATGGGAAAATTACAGATATTATTTACTTTGGCCCACACGATCACCCTAGACCTCAACCTCACATTCCTGTTGCTGTTGGAGTTGTTAACATGGTTGAAGAAAAACTAGATGATCATGCATCCAGAAGTTCACAAGATAAGCCCTCCACTGCACTTGGCCAGACACCTCGTAAAACTGAGCCGGGTGATGCGCTTCAACTGTCATTAGACATGGCCAATGATAAGGAAAAAGATGAAGCTTCGAAAAGGTCTAGGATCAATGATGAGGTGGACAGTGATGATACACGAGACTTGAAACGAGAGAAGAAAATATGTAATATTGACGTGACAGTAGCAGACAAGTCAACGGTTGAATCTCGTGTTGTTGTTCAAACACCCAGTGAGGTTGACATTGTTAACGATGGATACCGCTGGCGGAAGTACGGACAGAAACTGGTGAAAGGCAATCCAAATCCTAGGAGTTACTACAGATGCTCAAGTCCTGGATGTCCAGTTAAGAAACATGTAGAGAGGGCATCTCATGATCCAAAAGTGGTTCTTACCACGTATGAGGGTCATCATGACCATGATATGCCTCCTGCAAGGACTGTGACATTGAACTCAGCTGGGTCCACAGCAGCCCACAGTGATGAGATGAAAACAAAAACGGTCGGTAGTTCTATTGGCCAGGATACGGTGGTTCATGCTAATAAGGATCCTCCCAGCAATTCAAGTTCTGAAGACAAATTAATTGAAACGAATGGCAAGTCGAATGCCACAGAAGCAAGCGATAGAATTGTCCTCGACATGGTGGTATACCAGGCAAGGAGTTTCGAGTGCTCGAAATAA 1278 44.13 MVSSGDQIETKVDSDRLEHEQSSFSQAQASQEDPGGTNASNSDHKNTAASRETLEEAVKQPDVTIPLVDRGDISNTVAEKVTQNPIHADQDSHPDLKVSITSTIREKVSEDGYNWRKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTHDGKITDIIYFGPHDHPRPQPHIPVAVGVVNMVEEKLDDHASRSSQDKPSTALGQTPRKTEPGDALQLSLDMANDKEKDEASKRSRINDEVDSDDTRDLKREKKICNIDVTVADKSTVESRVVVQTPSEVDIVNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASHDPKVVLTTYEGHHDHDMPPARTVTLNSAGSTAAHSDEMKTKTVGSSIGQDTVVHANKDPPSNSSSEDKLIETNGKSNATEASDRIVLDMVVYQARSFECSK 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6812437 6817790 - Cp4.1LG04g03970.1 Cpe04g00677 468239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00677 425 MobiDBLite consensus disorder prediction 187 246 - -
Cpe04g00677 425 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 406 IPR044810 GO:0003700
Cpe04g00677 425 MobiDBLite consensus disorder prediction 356 401 - -
Cpe04g00677 425 Pfam WRKY DNA -binding domain 110 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe04g00677 425 Pfam WRKY DNA -binding domain 283 339 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe04g00677 425 ProSiteProfiles WRKY domain profile. 277 342 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe04g00677 425 ProSiteProfiles WRKY domain profile. 104 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe04g00677 425 SUPERFAMILY WRKY DNA-binding domain 104 168 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe04g00677 425 SMART WRKY_cls 109 167 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe04g00677 425 SMART WRKY_cls 282 341 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe04g00677 425 Gene3D WRKY domain 269 335 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe04g00677 425 PANTHER WRKY TRANSCRIPTION FACTOR 1 1 406 - -
Cpe04g00677 425 MobiDBLite consensus disorder prediction 1 63 - -
Cpe04g00677 425 MobiDBLite consensus disorder prediction 21 47 - -
Cpe04g00677 425 MobiDBLite consensus disorder prediction 220 246 - -
Cpe04g00677 425 SUPERFAMILY WRKY DNA-binding domain 274 342 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe04g00677 425 Gene3D WRKY domain 95 169 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00677 Cpe-Chr4:6812437 Cpe08g00812 Cpe-Chr8:6472290 6.60E-15 dispersed
Cpe04g00677 Cpe-Chr4:6812437 Cpe08g00850 Cpe-Chr8:6729186 1.17E-82 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49361 PF03106 WRKY 5.60E-26 CL0274 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00677 K18834 - csv:101212482 618.231