Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00700 ATGCCAAAGAACAAGGGAAAGGGAGGTAAGAATAGGAAGAGAGGTAAGAATGAGGCAGATGATGAGAAGCGTGAGCTTGTGTTTAAGGAAGATGGGCAAGAATATGCTCAAGTGCTCCGAATGCTAGGTAATGGTCGGTGTGAAGCGATGTGTATCGATGGGACTAAACGTCTTTGTCATATTCGGGGAAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATCATACTCGTTGGTCTTCGTGACTATCAAGACGACAAAGCTGACGTGATTCTCAAATACATGCCTGATGAAGCTAGGCTTTTGAAAGCTTATGGTGAACTACCTGAGAATACACGTCTTAACGAGGGTATTGTTGGGGGTATGGATGATGACGATGAAGGTGGTGGTGATGCTTATATTGAGTTTGAGGACGAAGATATTGATAGGATCTAG 438 43.61 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6933419 6933856 - Cp4.1LG04g03890.1 Cpe04g00700 468262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00700 145 ProSitePatterns Eukaryotic initiation factor 1A signature. 41 63 IPR018104 GO:0003743|GO:0006413
Cpe04g00700 145 MobiDBLite consensus disorder prediction 1 25 - -
Cpe04g00700 145 CDD S1_IF1A 33 109 IPR001253 GO:0003743|GO:0006413
Cpe04g00700 145 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1A-LIKE 1 145 - -
Cpe04g00700 145 Pfam Translation initiation factor 1A / IF-1 32 93 IPR006196 GO:0003723|GO:0003743|GO:0006413
Cpe04g00700 145 SMART eIF1neu4 28 110 IPR001253 GO:0003743|GO:0006413
Cpe04g00700 145 Hamap Translation initiation factor 1A [eif1a]. 16 110 IPR001253 GO:0003743|GO:0006413
Cpe04g00700 145 Gene3D - 2 145 IPR012340 -
Cpe04g00700 145 ProSiteProfiles S1 domain IF1 type profile. 22 96 IPR006196 GO:0003723|GO:0003743|GO:0006413
Cpe04g00700 145 SUPERFAMILY Nucleic acid-binding proteins 2 143 IPR012340 -
Cpe04g00700 145 PANTHER EIF-1A 1 145 IPR001253 GO:0003743|GO:0006413
Cpe04g00700 145 TIGRFAM eIF-1A: translation initiation factor eIF-1A 14 110 IPR001253 GO:0003743|GO:0006413
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00700 Cpe-Chr4:6933419 Cpe08g00083 Cpe-Chr8:530343 3.15E-89 dispersed
Cpe15g00715 Cpe-Chr15:7576707 Cpe04g00700 Cpe-Chr4:6933419 1.63E-23 wgd
Cpe16g00399 Cpe-Chr16:5528162 Cpe04g00700 Cpe-Chr4:6933419 1.37E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00700 K03236 - csv:101207840 274.248