Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe04g00706 | ATGTCTGAAGAGCAAACAATTTCAAATGCTTTCATTTGCAGCTTGCCAACACTTGGATCAAACAACAACCCTCCTGTTCTTAAGAAGAAGAGGAATCTCCCCGGAAATCCAGGCAAGAACAACCTTTGTGTTTTGTTTCATATGTTTATTGTTCTTTTTGCTCTTGTTTTTGTGGCTTTTGTCTATCCGAAAGCGGAAGTTGTGGCATTGTCGCCGAAGACCCTAATGGCGACGAACCGATTCTTGTGTGACATATGTGGGAAGGGTTTTCAGAGGGATCAGAACCTACAGCTGCATAGAAGAGGACACAATCTTCCATGGAAGCTGAAGCAAAGAAGCAACAGCAACAAAGAGCCAAGGAAGAGAGTTTATGTTTGTCCAGAGAAGAGCTGTGTGCACCACCATCCTTCAAGGGCGCTTGGAGACCTCACAGGCATTAAAAAGCACTTTTGCAGGAAGCATGGCGAGAAGAAGTGGAAGTGCGAGAAGTGCTCCAAGAAATATGCTGTGCAGTCAGATTGGAAAGCACACTCCAAAACTTGTGGCACCAAAGAAGCATACTGCATGGCCTTAGCAGAGGAAACAGCAAGACTAAACGCAGCAGCATCAACTATGAACACAGCTGACAACGGCTACCACTTCCTAAGACCCAACACAAATCCTCACCAATACTTCCCCTCCTCCACCTTTTTCAGACAAGATCATGAAAATTCTCAAATGTTCCTCAACAACAACGTTAATTCCCTCACACCCACAATAGCATTCCCTTTTTGGATGCCAAATTCTTCCCCACAAGACAATAATTTCCATCACCCACTTGCACCACCACCACTACCACCGCCGCCACCACCACCACCACCAACAGCAACAACAAGCTGTCTTCTTTCAGTTCCTTCCTTGTACAGCCACGAAGAACAAGCCAATCAAGCAATGGCATCATCATCAGCAGCAGCCAACATGTCAGCTACTGTTCTGCTGCAAAAGGCTGCTGAAATGGCAGTGACAAGCTCCACAACAACAGACCCATCATCATTAATGGCAAGTTTTGGGTTGAAATTCAGTGCCACAACTGATGGGAAAGCCTTGTTTTCAGGGCTTTATGGCTCAATGAACTCAAATTCCATTCCTAGTTGTTGCAGCCTTGAAAATGGTGGCGATCATCAAGACTCTGCTGCTAGTAACTTGATCCAAATGTACCCTGCTGCAAAGAGAATTAGACACACTGTTAGTGAAGAAAGTGTCACGGGTGGAGAAGGAGAAACAAGGGATTTCTTGGGTGTGGGAATCCCCACCATATGCCATCATCCATCAGCAGTGAATGGATGG | 1326 | 45.63 | MSEEQTISNAFICSLPTLGSNNNPPVLKKKRNLPGNPGKNNLCVLFHMFIVLFALVFVAFVYPKAEVVALSPKTLMATNRFLCDICGKGFQRDQNLQLHRRGHNLPWKLKQRSNSNKEPRKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEAYCMALAEETARLNAAASTMNTADNGYHFLRPNTNPHQYFPSSTFFRQDHENSQMFLNNNVNSLTPTIAFPFWMPNSSPQDNNFHHPLAPPPLPPPPPPPPPTATTSCLLSVPSLYSHEEQANQAMASSSAAANMSATVLLQKAAEMAVTSSTTTDPSSLMASFGLKFSATTDGKALFSGLYGSMNSNSIPSCCSLENGGDHQDSAASNLIQMYPAAKRIRHTVSEESVTGGEGETRDFLGVGIPTICHHPSAVNGW | 442 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 7011986 | 7014679 | - | Cp4.1LG04g03720.1 | Cpe04g00706 | 468268 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe04g00706 | 442 | MobiDBLite | consensus disorder prediction | 266 | 290 | - | - | |
Cpe04g00706 | 442 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 186 | 435 | - | - | |
Cpe04g00706 | 442 | MobiDBLite | consensus disorder prediction | 270 | 290 | - | - | |
Cpe04g00706 | 442 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 83 | 103 | IPR013087 | - | |
Cpe04g00706 | 442 | SMART | c2h2final6 | 159 | 179 | IPR013087 | - | |
Cpe04g00706 | 442 | SMART | c2h2final6 | 81 | 103 | IPR013087 | - | |
Cpe04g00706 | 442 | Gene3D | Classic Zinc Finger | 77 | 104 | - | - | |
Cpe04g00706 | 442 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 81 | 103 | IPR013087 | - | |
Cpe04g00706 | 442 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 22 | 185 | - | - | |
Cpe04g00706 | 442 | PANTHER | ZINC FINGER PROTEIN MAGPIE | 186 | 435 | - | - | |
Cpe04g00706 | 442 | PANTHER | ZINC FINGER PROTEIN MAGPIE | 22 | 185 | - | - | |
Cpe04g00706 | 442 | SUPERFAMILY | beta-beta-alpha zinc fingers | 80 | 179 | IPR036236 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe04g00706 | Cpe16g00408 | CCT | |
Cpe04g00706 | Cpe05g01416 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe04g00706 | Cpe-Chr4:7011986 | Cpe03g00175 | Cpe-Chr3:867681 | 2.15E-82 | dispersed | |
Cpe16g00408 | Cpe-Chr16:5562431 | Cpe04g00706 | Cpe-Chr4:7011986 | 2.58E-84 | wgd | |
Cpe04g00706 | Cpe-Chr4:7011986 | Cpe05g01416 | Cpe-Chr5:9928676 | 3.64E-100 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49362 | None | None | None | None | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe04g00706 | K25870 | - | csv:101207997 | 495.352 |