Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00706 ATGTCTGAAGAGCAAACAATTTCAAATGCTTTCATTTGCAGCTTGCCAACACTTGGATCAAACAACAACCCTCCTGTTCTTAAGAAGAAGAGGAATCTCCCCGGAAATCCAGGCAAGAACAACCTTTGTGTTTTGTTTCATATGTTTATTGTTCTTTTTGCTCTTGTTTTTGTGGCTTTTGTCTATCCGAAAGCGGAAGTTGTGGCATTGTCGCCGAAGACCCTAATGGCGACGAACCGATTCTTGTGTGACATATGTGGGAAGGGTTTTCAGAGGGATCAGAACCTACAGCTGCATAGAAGAGGACACAATCTTCCATGGAAGCTGAAGCAAAGAAGCAACAGCAACAAAGAGCCAAGGAAGAGAGTTTATGTTTGTCCAGAGAAGAGCTGTGTGCACCACCATCCTTCAAGGGCGCTTGGAGACCTCACAGGCATTAAAAAGCACTTTTGCAGGAAGCATGGCGAGAAGAAGTGGAAGTGCGAGAAGTGCTCCAAGAAATATGCTGTGCAGTCAGATTGGAAAGCACACTCCAAAACTTGTGGCACCAAAGAAGCATACTGCATGGCCTTAGCAGAGGAAACAGCAAGACTAAACGCAGCAGCATCAACTATGAACACAGCTGACAACGGCTACCACTTCCTAAGACCCAACACAAATCCTCACCAATACTTCCCCTCCTCCACCTTTTTCAGACAAGATCATGAAAATTCTCAAATGTTCCTCAACAACAACGTTAATTCCCTCACACCCACAATAGCATTCCCTTTTTGGATGCCAAATTCTTCCCCACAAGACAATAATTTCCATCACCCACTTGCACCACCACCACTACCACCGCCGCCACCACCACCACCACCAACAGCAACAACAAGCTGTCTTCTTTCAGTTCCTTCCTTGTACAGCCACGAAGAACAAGCCAATCAAGCAATGGCATCATCATCAGCAGCAGCCAACATGTCAGCTACTGTTCTGCTGCAAAAGGCTGCTGAAATGGCAGTGACAAGCTCCACAACAACAGACCCATCATCATTAATGGCAAGTTTTGGGTTGAAATTCAGTGCCACAACTGATGGGAAAGCCTTGTTTTCAGGGCTTTATGGCTCAATGAACTCAAATTCCATTCCTAGTTGTTGCAGCCTTGAAAATGGTGGCGATCATCAAGACTCTGCTGCTAGTAACTTGATCCAAATGTACCCTGCTGCAAAGAGAATTAGACACACTGTTAGTGAAGAAAGTGTCACGGGTGGAGAAGGAGAAACAAGGGATTTCTTGGGTGTGGGAATCCCCACCATATGCCATCATCCATCAGCAGTGAATGGATGG 1326 45.63 MSEEQTISNAFICSLPTLGSNNNPPVLKKKRNLPGNPGKNNLCVLFHMFIVLFALVFVAFVYPKAEVVALSPKTLMATNRFLCDICGKGFQRDQNLQLHRRGHNLPWKLKQRSNSNKEPRKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEAYCMALAEETARLNAAASTMNTADNGYHFLRPNTNPHQYFPSSTFFRQDHENSQMFLNNNVNSLTPTIAFPFWMPNSSPQDNNFHHPLAPPPLPPPPPPPPPTATTSCLLSVPSLYSHEEQANQAMASSSAAANMSATVLLQKAAEMAVTSSTTTDPSSLMASFGLKFSATTDGKALFSGLYGSMNSNSIPSCCSLENGGDHQDSAASNLIQMYPAAKRIRHTVSEESVTGGEGETRDFLGVGIPTICHHPSAVNGW 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7011986 7014679 - Cp4.1LG04g03720.1 Cpe04g00706 468268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00706 442 MobiDBLite consensus disorder prediction 266 290 - -
Cpe04g00706 442 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 186 435 - -
Cpe04g00706 442 MobiDBLite consensus disorder prediction 270 290 - -
Cpe04g00706 442 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Cpe04g00706 442 SMART c2h2final6 159 179 IPR013087 -
Cpe04g00706 442 SMART c2h2final6 81 103 IPR013087 -
Cpe04g00706 442 Gene3D Classic Zinc Finger 77 104 - -
Cpe04g00706 442 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 103 IPR013087 -
Cpe04g00706 442 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 185 - -
Cpe04g00706 442 PANTHER ZINC FINGER PROTEIN MAGPIE 186 435 - -
Cpe04g00706 442 PANTHER ZINC FINGER PROTEIN MAGPIE 22 185 - -
Cpe04g00706 442 SUPERFAMILY beta-beta-alpha zinc fingers 80 179 IPR036236 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00706 Cpe16g00408 CCT
Cpe04g00706 Cpe05g01416 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00706 Cpe-Chr4:7011986 Cpe03g00175 Cpe-Chr3:867681 2.15E-82 dispersed
Cpe16g00408 Cpe-Chr16:5562431 Cpe04g00706 Cpe-Chr4:7011986 2.58E-84 wgd
Cpe04g00706 Cpe-Chr4:7011986 Cpe05g01416 Cpe-Chr5:9928676 3.64E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49362 None None None None Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00706 K25870 - csv:101207997 495.352