Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00712 ATGGACCGTGGCTTGATCATGTTCGATCATAACAACAACGACGACGACAACAACAACGATAGCGATAGCAACAACAAGAAGATGTTTTTGCCTTACAATGATCATGGTCAAAGTTGTAGAGCTAAACTTATGGCTCATCCGTTGTTTCCTCGTCTATTGGCTTCCTATGTGAATTGTCAGAAGGTGGGTGCGCCGCCGGATGTGGTGGCGAGGTTAGAACAGGCTTGTACGGTGGCTGCTGGGAATTGTAGGACGGTGGGACGTGGGGATGATCCGGGGTTGGATCAGTTCATGGAGGCTTATTGTGAGATGTTGAGTAAATATGAACAAGAGCTTACTAAGCCTTTTAAAGAAGCTATGGTGTTCTTTTCGAGGATTGAGTCTCAGCTTAAAGCCCTAGCTGCTTCCTCTTCTTCTTCGGATGTTTACAATAGAGACTACATCGAGATCGAGGTTGTCGATATGAACGAAAACTACATCGACCCACAAGCCGAAGAGAAGGAACTCAAAGGCCAACTTCTACGCAAATATAGCGGATACCTCGATAGCCTAAAGCAAGAGTTTCTTAAGAAGAAGAAGAATGGAAAGAAGCGCCATTGGAAGCCATCGGAGGACATGCAGTTTGTGGTGATGGATGCTGCTCATCCACACTACTATTTGGATAATCTTATATGCAATCCATTCTCTATGGAC 693 45.02 MDRGLIMFDHNNNDDDNNNDSDSNNKKMFLPYNDHGQSCRAKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVGRGDDPGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDVYNRDYIEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLDSLKQEFLKKKKNGKKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMD 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7053610 7056981 + Cp4.1LG04g03800.1 Cpe04g00712 468274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00712 231 PANTHER HOMEOBOX PROTEIN SBH1-LIKE ISOFORM X1 196 225 - -
Cpe04g00712 231 MobiDBLite consensus disorder prediction 8 29 - -
Cpe04g00712 231 Pfam ELK domain 168 189 IPR005539 GO:0003677
Cpe04g00712 231 Pfam KNOX2 domain 89 133 IPR005541 GO:0003677|GO:0005634
Cpe04g00712 231 SMART KNOX1_2 37 81 IPR005540 GO:0003677|GO:0005634
Cpe04g00712 231 MobiDBLite consensus disorder prediction 8 22 - -
Cpe04g00712 231 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 15 196 - -
Cpe04g00712 231 ProSiteProfiles ELK domain profile. 168 188 IPR005539 GO:0003677
Cpe04g00712 231 Pfam KNOX1 domain 40 76 IPR005540 GO:0003677|GO:0005634
Cpe04g00712 231 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 196 225 - -
Cpe04g00712 231 PANTHER HOMEOBOX PROTEIN SBH1-LIKE ISOFORM X1 15 196 - -
Cpe04g00712 231 SMART ELK_2 168 189 IPR005539 GO:0003677
Cpe04g00712 231 SMART KNOX2_2 84 135 IPR005541 GO:0003677|GO:0005634
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00712 Cpe16g00767 CCT
Cpe04g00712 Cpe05g01426 CCT
Cpe04g00712 Cpe16g00767 ECH
Cpe04g00712 Cpe05g01426 ECH
Cpe04g00712 Cpe15g00730 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00712 Cpe-Chr4:7053610 Cpe19g00947 Cpe-Chr19:6757566 2.18E-75 dispersed
Cpe04g00712 Cpe-Chr4:7053610 Cpe02g00244 Cpe-Chr2:1263078 3.10E-43 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00712 - - cpep:111792192 386.341