Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00716 ATGAACTCCCGATTTGGGTTTTTGTTATTGGTTTTGATATCTGTTCTTCTGGGTGCTGATTCAAAGTGCCCTAGAACATGCGATGTAGCTTTGGGTTCATATTTAGTATGGCAGGGAAGCAATTTGAGTTTGATATCCAATCTGTTCGGCGTGCAATCCCCTGATACCATTGTGAGCTACAACAGAGATAAAGTTCCCAACAAAGACACCATTACTAGCGGCGATAGGATCAACATTCCATTCTCCTGCGGCTGTATTAACGATGCTTTTCTGGGTCATATGTTTCAGTACAGGATTAACAGTGGAGATAGCTACAATCAAATTGCGACCAAATTCTACGCGGGCTTGACTACGGTGGACATGTTACAGAGATTCAATAATTTTGATGTTAGTCGGCTTCCTATAGATGGAATTTTGAATGTAGTGGTGAACTGTTCTTGTGGGGATCCTGATGTTTCCAAGGATTATGGGCTGTTCATCACTTACCCACTTGGATCAAATGATAGTTGGGCTAATTTGGAACGAGATACGAATGTCAGCTCGAATTTGCTGCAGCAGTACAATCAGGGTGTGAATTTCAGCGCAGGAAATTTGATCTTCATTCCAGGCAGAGGACTTGCAGGTGGAGCCATTGCTGGCTTAGTTATTGGTGTAGTTCTTGGGGTCTTACTTGTAGCAGGCGTCGTTTACATCGTCGTTCGAAGGAGGAAATCGAAAAGGTCTACATTGCTGGTGTCCTCCCAAGATTTATCTTCTCAAGATGGGCATGGTCTCGTGACGGGAAGTTCCATGGATAAATCTACTGAATCGAATGGTCGAGGTGGTGGTATAGCTGCAGTCACAAATATTACTGTGGAAAAATCAGTGGAATTCTCATACGAAGAGCTTGCGAAGGCGACCGATAACTTTAGTTTGGCGAACAAAATCGGTGAAGGTGGCTTTGGATCGGTTTACTATGCAGAACTCAGAGGAGAGAGAGCAGCAATAAAGAAGATGGATATGGAAGCTACAAGGGAGTTCCTCGCCGAAATTAAAGTTCTAACACGCGTTCACCACTTGAACCTGGTGCGTTTGATAGGATATTGTGTTGAGAATTCTCTATTCCTAGTCTATGAGTTCATTGAGAATGGCAATTTAGGCCAACATTTACGTGGCACAGGTCGGGATCCGTTGCCCTGGCATACTAGGGTCCAAGTCGCGCTTGATTCAGCTCGAGGTCTTGAGTATATCCATGAGCACACCGTGCCCGTTTATATTCATCGTGATATCAAATCAGCCAATATATTGATTGACAAGAACTTTCATGGAAAGGTTGCGGATTTCGGATTAACCAAGTTGACTGAAATTCTGGCTAGTTTTGTGTCTTATAACGCTTTGATTGATATCTACTGCACCTCCAGATATGCACAATATGGTGATGTTTCTCCAAAGATCGACGTATATGCTTTTGGTGTCGTTCTTTACGAGCTTATTTCAGCCAAGGAAGCTGTGGTTAAGACGAACAGAGCCAGCGCGATTAACGAGTCAAAAGGCCTTGTCGCTTTGTTTGAAGATGTACTGAATCAACCCGATGCAAAGGAGAACCTACACAAACTAGTCGACCCAAGACTCAAAGAGAACTACCCGCTCGATTCGGTTTTCAAGATGGCTCAACTTGCCAGAGCATGTACACATGAGAATCCACAGCTACGCCCAAGCATGAGATCCATTGTGGTTGCTCTCATGACACTTTCTTCCGCAACAGAAGATTGGGATGTTGGCTCGTTCTACGAAAACCAAGCCCTCGTCAACTTAATGTCGGGAAGGTAG 1809 44.06 MNSRFGFLLLVLISVLLGADSKCPRTCDVALGSYLVWQGSNLSLISNLFGVQSPDTIVSYNRDKVPNKDTITSGDRINIPFSCGCINDAFLGHMFQYRINSGDSYNQIATKFYAGLTTVDMLQRFNNFDVSRLPIDGILNVVVNCSCGDPDVSKDYGLFITYPLGSNDSWANLERDTNVSSNLLQQYNQGVNFSAGNLIFIPGRGLAGGAIAGLVIGVVLGVLLVAGVVYIVVRRRKSKRSTLLVSSQDLSSQDGHGLVTGSSMDKSTESNGRGGGIAAVTNITVEKSVEFSYEELAKATDNFSLANKIGEGGFGSVYYAELRGERAAIKKMDMEATREFLAEIKVLTRVHHLNLVRLIGYCVENSLFLVYEFIENGNLGQHLRGTGRDPLPWHTRVQVALDSARGLEYIHEHTVPVYIHRDIKSANILIDKNFHGKVADFGLTKLTEILASFVSYNALIDIYCTSRYAQYGDVSPKIDVYAFGVVLYELISAKEAVVKTNRASAINESKGLVALFEDVLNQPDAKENLHKLVDPRLKENYPLDSVFKMAQLARACTHENPQLRPSMRSIVVALMTLSSATEDWDVGSFYENQALVNLMSGR 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7076933 7083387 + Cp4.1LG04g03640.1 Cpe04g00716 468278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00716 602 SUPERFAMILY Protein kinase-like (PK-like) 286 574 IPR011009 -
Cpe04g00716 602 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 5 602 IPR044812 GO:0019199|GO:0045087
Cpe04g00716 602 CDD TM_EGFR-like 204 240 - -
Cpe04g00716 602 Gene3D Transferase(Phosphotransferase) domain 1 374 593 - -
Cpe04g00716 602 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Cpe04g00716 602 SMART LysM_2 96 142 IPR018392 -
Cpe04g00716 602 SMART LysM_2 33 80 IPR018392 -
Cpe04g00716 602 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1 5 602 - -
Cpe04g00716 602 ProSiteProfiles Protein kinase domain profile. 303 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g00716 602 SMART serkin_6 303 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g00716 602 ProSiteProfiles LysM domain profile. 32 79 IPR018392 -
Cpe04g00716 602 MobiDBLite consensus disorder prediction 251 273 - -
Cpe04g00716 602 Gene3D Phosphorylase Kinase; domain 1 288 373 - -
Cpe04g00716 602 Pfam LysM domain 97 133 IPR018392 -
Cpe04g00716 602 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524
Cpe04g00716 602 Pfam Protein tyrosine and serine/threonine kinase 305 573 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01557 Cpe-Chr1:9275385 Cpe04g00716 Cpe-Chr4:7076933 3.10E-54 dispersed
Cpe02g01695 Cpe-Chr2:13949794 Cpe04g00716 Cpe-Chr4:7076933 1.13E-51 dispersed
Cpe04g00716 Cpe-Chr4:7076933 Cpe02g00744 Cpe-Chr2:4735010 1.02E-59 dispersed
Cpe19g00579 Cpe-Chr19:4835778 Cpe04g00716 Cpe-Chr4:7076933 1.41E-49 dispersed
Cpe04g00716 Cpe-Chr4:7076933 Cpe19g00576 Cpe-Chr19:4824851 7.27E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62344 PF07714 PK_Tyr_Ser-Thr 2.80E-40 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00716 - K13429 csv:101203576 924.465