Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00721 ATGACCTGGACCCGACTCGCCGCCGTCGGCCACGGCTCCTCCGCCACCGTCTACCTCGCCTCCGCCGCCCCTGCCGGAGACGTTTTTGCTGTCAAGTCCGCCGAGCTTCCCGAATCGGAGTTCTTGAAAACAGAGCAGAGGATTCTTTCTTCTTTGTCCCACCCTTCCATTGTGAGCTACAGGGGATTCGATGTAACCAGAGAGAATGGGAAGCTGATGTATAATCTCTTCATGGAGTACGCCACCGGCGGCACACTCGCCGATGAAATTCTCCGGTGCGGCGGCTGGATTAAAGAGACGGCGGCGGGATTCTACACGCGTGAAATTGTGAAAGGATTGGAGTATTTGCACAAAAGGGGTTTGGTGCATTGTGATATTAAAGCTAAGAATATTTTAATCGGGGAAGATGGTTTGAAGATTGCGGATTTCGGATGCTCGAAATGGGTTAATGAACCGGCGGCTATCGGTGGAACGCCGATGTTCATGGCGCCGGAAGTAGCACGTGGGGAAAAACAGGGGATTTCCTCTGACATTTGGTCACTTGGGTGTACTTTAATCGAAATGGTCAACGGTGCTCCACCGTGGCCAACCGACGGCGACCCAGTTTCAGTACTGTACCGGATAGGATATTCCGGCGAGTCGCCGGAAATTCCAAGCTTTCTATCGGAGAAAGCGAAGGATTTTCTGGGAAAATGCTTGAGAAGAAACCCAACAGAACGCTGGAGCGCGAGCCAGCTTCTTGAACATCCATTCTTAGAGGACACGAATTCTGAGTGGTTCGAGGAATCCAAGGAATTAGATTCAAATTCTCCGACAAGTATCTTGGATCAAGGCGTTTGGAATTCGCAAAGTGAGCTGAAAACAGAGGAATGGGACGACGACAGAATCAGACGGCTGTCGATGTTCCGATGGGAAATCAAGTGGGAATCGGACGGTGAGAATTGGATGACGATCAGAGGAAGGTGCGTGGACGGTGAAGATGAAGCGGAATCCATTAGTGGGCGAACCAAAAGCTTGGAATTGTTTGATAGAACAGTTAGGTTTAGAGTAAGTGATGATGTAATTAGTGATCTTGTTTCATTAATTAGTTGA 1092 49.63 MTWTRLAAVGHGSSATVYLASAAPAGDVFAVKSAELPESEFLKTEQRILSSLSHPSIVSYRGFDVTRENGKLMYNLFMEYATGGTLADEILRCGGWIKETAAGFYTREIVKGLEYLHKRGLVHCDIKAKNILIGEDGLKIADFGCSKWVNEPAAIGGTPMFMAPEVARGEKQGISSDIWSLGCTLIEMVNGAPPWPTDGDPVSVLYRIGYSGESPEIPSFLSEKAKDFLGKCLRRNPTERWSASQLLEHPFLEDTNSEWFEESKELDSNSPTSILDQGVWNSQSELKTEEWDDDRIRRLSMFRWEIKWESDGENWMTIRGRCVDGEDEAESISGRTKSLELFDRTVRFRVSDDVISDLVSLIS 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7099314 7100405 + Cp4.1LG04g03630.1 Cpe04g00721 468283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00721 363 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 336 - -
Cpe04g00721 363 Pfam Protein kinase domain 5 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g00721 363 SMART serkin_6 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g00721 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Cpe04g00721 363 CDD STKc_MAPKKK 3 252 - -
Cpe04g00721 363 ProSiteProfiles Protein kinase domain profile. 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g00721 363 Gene3D Transferase(Phosphotransferase) domain 1 2 307 - -
Cpe04g00721 363 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Cpe04g00721 363 SUPERFAMILY Protein kinase-like (PK-like) 4 286 IPR011009 -
Cpe04g00721 363 PANTHER MAP KINASE KINASE KINASE 1 336 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00721 Cpe16g00429 CCT
Cpe04g00721 Cpe05g01434 CCT
Cpe04g00721 Cpe16g00429 ECH
Cpe04g00721 Cpe05g01434 ECH
Cpe04g00721 Cpe15g00739 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00721 Cpe-Chr4:7099314 Cpe19g00953 Cpe-Chr19:6785473 1.42E-111 dispersed
Cpe15g00739 Cpe-Chr15:7711421 Cpe04g00721 Cpe-Chr4:7099314 0 wgd
Cpe16g00429 Cpe-Chr16:5648554 Cpe04g00721 Cpe-Chr4:7099314 2.95E-131 wgd
Cpe04g00721 Cpe-Chr4:7099314 Cpe05g01434 Cpe-Chr5:10022802 4.23E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62345 PF00069 Pkinase 1.20E-56 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00721 K20716 - csv:101205351 501.901