Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00730 ATGGGAATATTTGGTGCTCTACCGCTGCTGCATACTTTGATATGGCTGTTTCTTAGTGGTTCGATCTGGTGCCAAAAGGCAGCTGTGGTAAATATTGGTGCGGTTTTTACTTTCAATTCGGTTATTGGTAGAGCAGCAAAGCCGGCGATGGAAGCAGCAATCGCCGACATAAATGCTGACCCCAACATCTTGAGTGGGACAAAGGTGAAGCTCCTGATGGAGGACTCTAACTGCAGCGACTTCTTGGGCTCTGTTGGGGCTTTGCATGTACTTGAGAAAGAGATCGTTGCCATCATTGGCCCACAATCCTCGGTGGTGGCTCATGTGATTTCTGAGCTTGTTAATGGTCTACAAATTCCTCAAGTATCATATGGTGCCACTGATCCAACATTATCGACTCTCCAACTCCCTTTCTTCCTCCGAACCACTTTAAGTGACTCTTACCAAATGGCTGCCATGGCTGACTTGATTGATTACTATGGGTGGAAAGAAGTCATTGTTATATTTTTGGATGATGATTATGGCAGAAATGGGATATCTTCTTTGGGTGATGAACTTCAGAAGAAAATGTGTCGTATTGCTCATGGATTTGGCTTGCCTTCTCTGGCTAATCTTACTAAGATCACAGAGATACTTAACCAATCTAAATTGCTCGGTCCTCGTGTTTATGTCGTTCACGTCGGCCCCGATCCTCAATTAAGAATCTTCACCATTGCCCATAAACTTGGTATGCTTTCCAGCAATTACGTTTGGTTTGCAACTGATTGGCTTGCTACAACTCTAGATTCTTTTTCACCAACAGATCTTGCTTCACTTGATATACTTAATGGGGTAGTGGGGCTACGCCCTCATACTCAAGAGTCTAAAGGAAAGAAGGATTTGTGGAATCGTTTGAGCAAAATGCAGCCCAAAGGTTTGGCCAATTCTGCGTTGAATGTTTATGGACTGTATGCTTATGATTCAGTATGGGTTGTTGCCAGGGCAGTGGATAAGTTTCTCAAAGAAAATGGTAATATAACCTTTTCATCTACAGGTAAAGTATTTGGCACTAGTAAAAGTGGAATTCAACTAGGAAGGCTTAAAGTGTTTAATGGAGGAAGTGATCTTCTTAGGATTATTATGCAAACAAATTACAGTGGTTTAAGTGGGCGAATTCAGTTTGGTGAAGACAGAAATATCATCAATGGTAGCTATGATGTGATTAATATTGACCAAAAGGAAATTCGTACGGTGGGTTATTGGTTTAACTACTCAGGATTCTCGATTTCACCACCAGAAGCCTTGACATTGAAACAAAAAGATTCCCCCTTAGATCAGAAACTCGACATTGTAGTTTGGCCTGGTGGAAACTCAAACATACCAAACGGTTGGGTGATAGCAGACGCTGGAAAGCCCCTAAGAATTGCATATCCAAGAAGAGCAAGCTTTGTTGAGTTTGTTACTCAAGTGAACAACACCAATATAGTTCAAGGATACGTTATTGATATTTTCAAAGCAGCACTCAAGCTTATTCCATATGAAGTTCCTTACAAATTTGTGCCGTTTGGGGATGGTCAAGTCAATCCTAGTTACGATGAACTCGTTCAATCGGTTGCAGATAATGTGTTTGATGCAGCTGTTGGGGACATTGCTATTGTTACCAACCGTACAAAGGTTGTTGATTTTTCTCAACCCTATATCACTACCGGGCTTATCATAGTTGCCCCAGTTAAAGATTCAAAATCAAGTGCTTGGGTGTTTCTTAAACCATTTACAGCAGAGATGTGGTGTGTAACAGGATTTTCTTTTGTGATTATTGGGATTGTTATTTGGATGCTTGAGCACCGAATCAACGACCATTTTCGAGGTCCTCCAAAGAGGCAGATTATCACTATGTGTCTGTTCAGCTTTTCAACTCTGTTCAAGGCTAATCAAGAAGCAACCATTAGCCCACTTTCACGAATGGTGATGTTGGTATGGCTGTTCTTATTGTTGGTAATAACGTCAAGCTACACAGCAAGTTTGACATCAATACTCACAATTCAGAAACTTTGGTCGCCAATACGTGGAATTGATGACTTGGTTGCAAGTAACGTGCCAATAGGATATCAGGTAGGATCCTTTGCTTATGACTATTTGACACAGAGCCTTTTCATACCACGCTCCAGACTAGTGGAGCTTCACGACCCTGATGATTACGAGAAAGCGCTGCGGCTTGGTCCAAAAGGAGGCGGTGTGGCAGCTATCATTGATGAACTGCCATATCTGGAGTTATTTCTGTCTAAGACCAAAGAACTCTCTGAGAATGGAAAGCTTCAAGAGATACACGACACCTGGTTCTGTAAGCTGGGTTGTCCCGGGCAGCGGGGAGGAGAAGCGGAGCCAGACCAACTTCACCTAATCAGTTTCTGGGGTTTGTATTTACTTTGTGGAATCATTTCCTCTACTGCACTTTTCATGTTTCTTCTAAGAATAATTGGTCAGTATATCCGTTATCAACGACAACACCGTCGTTCAGAGGTGGTTACACCGACCCCCATTCCGTCCAATACTGGCTGTACTCAGACCATTCAGAGTTTTATGCGGTTTATTGACGAGAAGGATGAAGCCATCAAAAACTTCTTTCGAGCAGCACATTTACGTGGTGCTCAAAGTGGGGAGCAACTCCAGAGACATTCCGGAGGGACAAAGGAGAAGGCTAATTTAGAGGTACAGCTGGGGACCTCGAGTATGAATTCAGGATAA 2724 42.62 MGIFGALPLLHTLIWLFLSGSIWCQKAAVVNIGAVFTFNSVIGRAAKPAMEAAIADINADPNILSGTKVKLLMEDSNCSDFLGSVGALHVLEKEIVAIIGPQSSVVAHVISELVNGLQIPQVSYGATDPTLSTLQLPFFLRTTLSDSYQMAAMADLIDYYGWKEVIVIFLDDDYGRNGISSLGDELQKKMCRIAHGFGLPSLANLTKITEILNQSKLLGPRVYVVHVGPDPQLRIFTIAHKLGMLSSNYVWFATDWLATTLDSFSPTDLASLDILNGVVGLRPHTQESKGKKDLWNRLSKMQPKGLANSALNVYGLYAYDSVWVVARAVDKFLKENGNITFSSTGKVFGTSKSGIQLGRLKVFNGGSDLLRIIMQTNYSGLSGRIQFGEDRNIINGSYDVINIDQKEIRTVGYWFNYSGFSISPPEALTLKQKDSPLDQKLDIVVWPGGNSNIPNGWVIADAGKPLRIAYPRRASFVEFVTQVNNTNIVQGYVIDIFKAALKLIPYEVPYKFVPFGDGQVNPSYDELVQSVADNVFDAAVGDIAIVTNRTKVVDFSQPYITTGLIIVAPVKDSKSSAWVFLKPFTAEMWCVTGFSFVIIGIVIWMLEHRINDHFRGPPKRQIITMCLFSFSTLFKANQEATISPLSRMVMLVWLFLLLVITSSYTASLTSILTIQKLWSPIRGIDDLVASNVPIGYQVGSFAYDYLTQSLFIPRSRLVELHDPDDYEKALRLGPKGGGVAAIIDELPYLELFLSKTKELSENGKLQEIHDTWFCKLGCPGQRGGEAEPDQLHLISFWGLYLLCGIISSTALFMFLLRIIGQYIRYQRQHRRSEVVTPTPIPSNTGCTQTIQSFMRFIDEKDEAIKNFFRAAHLRGAQSGEQLQRHSGGTKEKANLEVQLGTSSMNSG 907
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7187633 7192811 - Cp4.1LG04g03400.1 Cpe04g00730 468292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00730 907 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 13 758 - -
Cpe04g00730 907 Pfam Ligand-gated ion channel 760 805 IPR001320 GO:0015276|GO:0016020
Cpe04g00730 907 Gene3D - 577 709 - -
Cpe04g00730 907 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 43 59 - -
Cpe04g00730 907 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 103 131 - -
Cpe04g00730 907 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 234 257 - -
Cpe04g00730 907 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 758 869 - -
Cpe04g00730 907 Gene3D - 145 420 - -
Cpe04g00730 907 Pfam Receptor family ligand binding region 47 404 IPR001828 -
Cpe04g00730 907 PIRSF IGluLR_plant 3 758 IPR017103 -
Cpe04g00730 907 PIRSF IGluLR_plant 756 903 IPR017103 -
Cpe04g00730 907 PANTHER GLUTAMATE RECEPTOR 3.7 13 758 - -
Cpe04g00730 907 PANTHER GLUTAMATE RECEPTOR 3.7 758 869 - -
Cpe04g00730 907 Gene3D - 467 576 - -
Cpe04g00730 907 SUPERFAMILY Periplasmic binding protein-like I 25 457 IPR028082 -
Cpe04g00730 907 CDD PBP1_GABAb_receptor_plant 31 424 IPR044440 -
Cpe04g00730 907 SMART GluR_14 467 775 IPR001320 GO:0015276|GO:0016020
Cpe04g00730 907 Gene3D - 49 395 - -
Cpe04g00730 907 MobiDBLite consensus disorder prediction 878 907 - -
Cpe04g00730 907 Pfam Bacterial extracellular solute-binding proteins, family 3 483 759 IPR001638 -
Cpe04g00730 907 SUPERFAMILY Periplasmic binding protein-like II 443 773 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00730 Cpe05g01441 CCT
Cpe04g00730 Cpe16g00443 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00730 Cpe-Chr4:7187633 Cpe16g00445 Cpe-Chr16:5732335 0 dispersed
Cpe16g00443 Cpe-Chr16:5718124 Cpe04g00730 Cpe-Chr4:7187633 0 wgd
Cpe04g00730 Cpe-Chr4:7187633 Cpe05g01441 Cpe-Chr5:10051077 2.41E-21 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00730 K05387 - csv:101203158 1423.3