Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00772 ATGCAGCTCCGCCGTGGCCATGCTACATTTTCGTCTTGTGGGTACTTATGGAGTGGGATAATGTTGGTGAATATGGTCGTAATGGGGAAGTTTCTTCTCGTTGAATCAGCTCGGCCTCAAAACCGTACGTCAGCTTCTCATTGGCTCCCCGCCACCGCCACTTGGTACGGCAGCCCGGAAGGCGACGGCAGCGACGGTGGGGCATGTGGGTATGGTAGTTTGGTGGATGTGAAGCCATTTAAGGCAAGAGTTGGTGCAGTGAGCCCTGTCTTATTCAAGGACGGTGAAGGATGTGGCGCATGCTATAAAGTCCGTTGCTTGGACCGAACCATATGCTCCAAACGAGCCGTTACCATAATAGTCACCGACGAGTGTCCCGGTGGCTATTGCTCCAATGGTCGCACCCACTTTGATCTTAGTGGCGCCGCTTTCGGCCGCATGGCTGTCGCGGGTGCCCACAGCCGTCTTCGTGACCGAGGCAAACTCTCAGTCGCTTACCGACGGACTCCATGTTTGTATCGTGGGAAGAACATAGCCTTCCATGTAAACGAAGGTTCTACCGATCATTGGCTCTCGCTTTTAGTCGAGTTCGAGGATGGTGATGGAGATATTGGTTCGATGCAAATCAAACAAGCAAAGTCGAGCGAGTGGATGGAAATGGCACACGTGTGGGGGGCGACGTGGTGCATAAATGGAGGACCTTTAGAGGGGCCATTCTCGGTGAAGCTAACCACGTTATCCACTGCCAAGACTCTCTCGACTAGAGATGTTATCCCGAAGAATTGGTCACCAAAGGCTACTTATACTTCCCGCTTGAACTTTTTATAA 828 52.17 MQLRRGHATFSSCGYLWSGIMLVNMVVMGKFLLVESARPQNRTSASHWLPATATWYGSPEGDGSDGGACGYGSLVDVKPFKARVGAVSPVLFKDGEGCGACYKVRCLDRTICSKRAVTIIVTDECPGGYCSNGRTHFDLSGAAFGRMAVAGAHSRLRDRGKLSVAYRRTPCLYRGKNIAFHVNEGSTDHWLSLLVEFEDGDGDIGSMQIKQAKSSEWMEMAHVWGATWCINGGPLEGPFSVKLTTLSTAKTLSTRDVIPKNWSPKATYTSRLNFL 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7401232 7403104 - Cp4.1LG04g03020.1 Cpe04g00772 468334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00772 275 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 189 270 IPR007117 -
Cpe04g00772 275 SUPERFAMILY Barwin-like endoglucanases 42 175 IPR036908 -
Cpe04g00772 275 Pfam Expansin C-terminal domain 178 259 IPR007117 -
Cpe04g00772 275 Pfam Lytic transglycolase 86 161 IPR009009 -
Cpe04g00772 275 PANTHER EXPANSIN-B3 41 274 - -
Cpe04g00772 275 Gene3D - 33 171 IPR036908 -
Cpe04g00772 275 SMART dpbb_1 84 166 IPR007112 -
Cpe04g00772 275 SUPERFAMILY PHL pollen allergen 176 270 IPR036749 -
Cpe04g00772 275 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 176 IPR007112 -
Cpe04g00772 275 Gene3D - 173 275 IPR036749 -
Cpe04g00772 275 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Cpe04g00772 275 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Cpe04g00772 275 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Cpe04g00772 275 PRINTS Expansin/Lol pI family signature 159 175 IPR007118 GO:0005576
Cpe04g00772 275 PRINTS Expansin/Lol pI family signature 217 231 IPR007118 GO:0005576
Cpe04g00772 275 PRINTS Expansin/Lol pI family signature 256 270 IPR007118 GO:0005576
Cpe04g00772 275 PRINTS Major pollen allergen Lol pI signature 86 97 IPR005795 GO:0005576|GO:0019953
Cpe04g00772 275 PRINTS Major pollen allergen Lol pI signature 126 141 IPR005795 GO:0005576|GO:0019953
Cpe04g00772 275 PRINTS Major pollen allergen Lol pI signature 148 163 IPR005795 GO:0005576|GO:0019953
Cpe04g00772 275 PRINTS Major pollen allergen Lol pI signature 180 195 IPR005795 GO:0005576|GO:0019953
Cpe04g00772 275 PRINTS Major pollen allergen Lol pI signature 196 211 IPR005795 GO:0005576|GO:0019953
Cpe04g00772 275 PRINTS Major pollen allergen Lol pI signature 246 263 IPR005795 GO:0005576|GO:0019953
Cpe04g00772 275 PANTHER EXPANSIN-B17 41 274 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00772 Cpe16g00785 CCT
Cpe04g00772 Cpe05g01493 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01834 Cpe-Chr3:13675469 Cpe04g00772 Cpe-Chr4:7401232 7.14E-74 dispersed
Cpe04g00772 Cpe-Chr4:7401232 Cpe08g00642 Cpe-Chr8:4293389 1.45E-37 dispersed
Cpe15g00630 Cpe-Chr15:7023144 Cpe04g00772 Cpe-Chr4:7401232 1.42E-26 dispersed
Cpe16g00785 Cpe-Chr16:7738643 Cpe04g00772 Cpe-Chr4:7401232 8.05E-105 wgd
Cpe04g00772 Cpe-Chr4:7401232 Cpe05g01493 Cpe-Chr5:10298659 1.10E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00772 K20628 - csv:101205324 476.863