Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00808 ATGAGCAGTGTTTGTGCTGAGAATCAGAAATATCAGTTTCATTTTCAATTTCCTCCTTCTTCTTCTGATTTTGTTGTTTCTGAGAGGATTCCTTTTCTGAAGGATATTAACGTTCCGCCGAGGAAGCTTCTTGCGGCGCGACGAGATCAAAACGCTGAAATGTGTACTGATTCGCCGCGATTCTCGTTTGCTGTTGAATCGCTTTTGCAGAAGTTTTTGCCGTTCAATGGCGAGGATGAGGCGGAGGAGGACGGCGATCCGTATTCGTCCGATCATTTTCGGATGTATGAGTTTAAGGTGAGGCGGTGTACTCGTAGTCGGAGTCATGATTGGACGGATTGTCCGTTTGCTCATCCTGGAGAGAAGGCTCGTCGGCGGGATCCTCGTCGGTTTCATTACTCCGGCACGATGTGTCCGGAGTTCCGGCGTGGTGGATGTGGCCGTGGTGATGGATGTGAGTTCGCTCATGGAGTTTTTGAGTGTTGGCTTCATCCGGCGAGGTATCGGACTGAGGCTTGTAAAGATGGAAAGAACTGTAAGAGGAAGGTCTGTTTCTTTGCTCATTCGCCTCGTGAGCTTCGTCTTTTGCCGCCGGTGAGTAACTTTCAAGGCGGTGGCTCTTGTTCTTCGCCGAATAAGAAGAGTTCTAATCTCAGATCGGCCGCTGGTTCTAATCACTGCTGTTTGTTTTGTCATTGCGGTGGAGCCGCCACCTCCTCGCCGACGTCGACGCTTTTCGGAATGTCTCATCTCTCTCCGCCGCACTCACCACCGCTCTCGCCGGGAAATCCTCGGTCGATGAATGGATTTTCGCCTATTTCAAGGTATAGTAATCCTGATCAGTCTAAATTAAAGGGAGTTTTGAGCTATAAAGATGCACTGACCGAGCTCATGAGCTCTATTGAATCCATGAACATCGACGACGCTAATGCCACTTTAGCGGCCGCCATCCCCGCCCCTAGACCAACGCCTTGGATCGATGTTTCATCTCTTAATCCTGAAGATCAACTGCAGTTTATTCTCTCCCCTTCCACTCCAAACTTCTCCGCCGCATCGGCGAACTTATCCTGCGAGCATAAATCTAACGCCGACAATGGATGGGCCTCCACCTCCGGTCCCGATCTCGGATGGGTTAATGATCTGCTGATGTAA 1152 50.09 MSSVCAENQKYQFHFQFPPSSSDFVVSERIPFLKDINVPPRKLLAARRDQNAEMCTDSPRFSFAVESLLQKFLPFNGEDEAEEDGDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPEFRRGGCGRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLLPPVSNFQGGGSCSSPNKKSSNLRSAAGSNHCCLFCHCGGAATSSPTSTLFGMSHLSPPHSPPLSPGNPRSMNGFSPISRYSNPDQSKLKGVLSYKDALTELMSSIESMNIDDANATLAAAIPAPRPTPWIDVSSLNPEDQLQFILSPSTPNFSAASANLSCEHKSNADNGWASTSGPDLGWVNDLLM 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7624036 7625187 - Cp4.1LG04g02750.1 Cpe04g00808 468370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00808 383 Gene3D - 132 195 - -
Cpe04g00808 383 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 35 382 - -
Cpe04g00808 383 SMART c3hfinal6 132 158 IPR000571 GO:0046872
Cpe04g00808 383 SMART c3hfinal6 167 190 IPR000571 GO:0046872
Cpe04g00808 383 ProSiteProfiles Zinc finger C3H1-type profile. 133 159 IPR000571 GO:0046872
Cpe04g00808 383 PANTHER UNKEMPT FAMILY MEMBER 35 382 IPR045234 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00808 Cpe-Chr4:7624036 Cpe04g01075 Cpe-Chr4:9425986 7.00E-67 dispersed
Cpe15g00814 Cpe-Chr15:8117133 Cpe04g00808 Cpe-Chr4:7624036 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49377 None None None None Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00808 K23047 - csv:101211149 573.548