Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00813 ATGGCTTCGTTCCTGTTCTTGTCCTCCTCCTCCAAAGCTTTAATCTTGTTACTCCTTCAGTTATCTTGTCTGTTTAAGAGCTTGAGCGCCAAACATGGTGGCGTAGTCACTCATAATGACCATCACCACCACCACCGTGCTCGATCACCGAGCACGAACCCGAGACTCCACCAAGCATTCCTTGCTCTCCAAGCATGGAAAAAGGTCATTTACTCTGACCCAAAAAACCATACCACCAATTGGGTAGGGCCTTCAGTTTGCAGCTACTTTGGGGTATACTGTGCCCCATCTCTCAACGACTCAAATGTTCAGGTCGTCGCCGGAATCGACTTAAACCACGGGGACATTGCCGGATTCCTTCCTAATGAATTAGGCCTTTTAACAGACCTTGCTCTGCTCCATCTCAACAGCAACCGTTTCTGCGGCGTTTTGCCTCAATCTTTAGCCAATTTGTCTCTCCTCTTCGAATTAGATTTAAGCAACAACAGATTCGTTGGCCCTTTTCCTTCTGTTGTTCTTCATCTTCCAAACTTAACATATCTCGACCTTCGATTCAACGAATTTGAAGGCCAAATTCCCCCTGAACTCTTCAACAAAAGCCTCGACGCCATTTTTATAAACAGCAATCGTTTCACCAACATTATCCCTCGAAACATCGGTGGAAAATCAGCCTCCGTGATTGTCTTTGCCAACAACAATTTGAAGGGCTGTCTTCCACCGACGATTGCAAGTTTTGCAAACAGTTTAGAAGAACTTTTGTTGATCAACACGAGTTTATCAGGCTGTTTGCCGCAAGAAATTGGGTTCTTGTACAAATTGAAGGTTTTGGATGTGAGTTTTAATGAATTAGTGGGTCCTTTGCCGTATAGTTTAGCTGGGTTGGGTCAATTGGAGCAATTGAATTTGGCTCACAATTTGTTTACTGGGAATTTGTTTGAAGGGCTTTGTAACCTTCCGAATTTGGAGAATGTGACGGTTTCTTATAATTACTTTTGTGAGGAAGAAGGGGTTTGCCGGAATTTGACGGCGGAAGGGGTTGCTTTTGATGATCGTCGGAATTGTGTGCCGGAGAAGCCGCTGCAGAGGAGTAAGAAGGAGTGTAGTGCGGTGGTTGAGCGTCCTGTGGATTGTTTTGAGCATCCGTGTGGCGGTGGTTATGGTTCAAGTATTGCGGCGGTTCCGGCTTCGGCGCCTATTTCTTCAACTTCTTCCGTTGTTGCCCCTGCCCACTTGTGA 1236 45.79 MASFLFLSSSSKALILLLLQLSCLFKSLSAKHGGVVTHNDHHHHHRARSPSTNPRLHQAFLALQAWKKVIYSDPKNHTTNWVGPSVCSYFGVYCAPSLNDSNVQVVAGIDLNHGDIAGFLPNELGLLTDLALLHLNSNRFCGVLPQSLANLSLLFELDLSNNRFVGPFPSVVLHLPNLTYLDLRFNEFEGQIPPELFNKSLDAIFINSNRFTNIIPRNIGGKSASVIVFANNNLKGCLPPTIASFANSLEELLLINTSLSGCLPQEIGFLYKLKVLDVSFNELVGPLPYSLAGLGQLEQLNLAHNLFTGNLFEGLCNLPNLENVTVSYNYFCEEEGVCRNLTAEGVAFDDRRNCVPEKPLQRSKKECSAVVERPVDCFEHPCGGGYGSSIAAVPASAPISSTSSVVAPAHL 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7646840 7648075 + Cp4.1LG04g02840.1 Cpe04g00813 468375

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00813 411 SMART LRR_typ_2 294 314 IPR003591 -
Cpe04g00813 411 SMART LRR_typ_2 127 150 IPR003591 -
Cpe04g00813 411 SMART LRR_typ_2 270 293 IPR003591 -
Cpe04g00813 411 SMART LRR_typ_2 175 199 IPR003591 -
Cpe04g00813 411 Pfam Leucine rich repeat N-terminal domain 59 94 IPR013210 -
Cpe04g00813 411 Gene3D Ribonuclease Inhibitor 226 346 IPR032675 -
Cpe04g00813 411 Gene3D Ribonuclease Inhibitor 59 225 IPR032675 -
Cpe04g00813 411 Pfam Leucine rich repeat 130 187 IPR001611 GO:0005515
Cpe04g00813 411 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1 406 - -
Cpe04g00813 411 PANTHER EXTENSIN-LIKE PROTEIN 1 406 - -
Cpe04g00813 411 SUPERFAMILY L domain-like 59 333 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00813 - - - cmos:111437069 744.577
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00813 Cpe-Chr4:7646840 Cpe08g00278 Cpe-Chr8:1792592 4.20E-132 dispersed
Cpe04g00813 Cpe-Chr4:7646840 Cpe11g01106 Cpe-Chr11:9219685 2.91E-132 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe02g00154 . 61 399 Leucine-rich Repeat extension Gene Families AT1G62440 55.8 8.0e-48 189.5
Cpe11g01106 CCT,CST 100 268 Leucine-rich Repeat extension Gene Families AT1G62440 71.6 2.0e-43 174.9
Cpe04g01144 . 53 225 Leucine-rich Repeat extension Gene Families AT1G62440 67.6 5.0e-42 170.2
Cpe07g00999 CCT,CST 68 237 Leucine-rich Repeat extension Gene Families AT1G62440 70.6 5.0e-42 170.2
Cpe18g00446 CCT 61 230 Leucine-rich Repeat extension Gene Families AT1G62440 68.2 4.7e-40 163.7
Cpe12g00384 . 42 225 Leucine-rich Repeat extension Gene Families AT1G62440 63.6 1.7e-37 155.2
Cpe04g00813 . 53 382 Leucine-rich Repeat extension Gene Families AT1G62440 55.8 5.4e-36 150.2
Cpe04g01144 . 26 397 Leucine-rich Repeat extension Gene Families AT4G13340 75.1 5.7e-67 253.1
Cpe11g01106 CCT,CST 43 451 Leucine-rich Repeat extension Gene Families AT4G13340 72.0 2.2e-66 251.1
Cpe18g00446 CCT 34 411 Leucine-rich Repeat extension Gene Families AT4G13340 73.1 1.2e-61 235.3
Cpe07g00999 CCT,CST 13 396 Leucine-rich Repeat extension Gene Families AT4G13340 71.6 1.7e-55 214.9
Cpe02g00154 . 17 221 Leucine-rich Repeat extension Gene Families AT4G13340 62.0 1.3e-42 172.2
Cpe03g01458 CST 43 368 Leucine-rich Repeat extension Gene Families AT4G13340 66.7 2.5e-38 157.9
Cpe17g00367 . 37 231 Leucine-rich Repeat extension Gene Families AT4G13340 67.2 4.7e-37 153.7
Cpe08g00278 CST 36 369 Leucine-rich Repeat extension Gene Families AT4G13340 62.1 8.0e-37 152.9
Cpe04g01144 . 28 400 Leucine-rich Repeat extension Gene Families AT3G24480 74.1 2.2e-72 270.4
Cpe11g01106 CCT,CST 75 446 Leucine-rich Repeat extension Gene Families AT3G24480 74.1 2.3e-69 260.4
Cpe18g00446 CCT 24 412 Leucine-rich Repeat extension Gene Families AT3G24480 70.0 2.6e-68 256.9
Cpe07g00999 CCT,CST 43 396 Leucine-rich Repeat extension Gene Families AT3G24480 74.0 4.3e-63 239.6
Cpe02g00154 . 25 221 Leucine-rich Repeat extension Gene Families AT3G24480 64.6 4.0e-45 179.9
Cpe12g00384 . 30 225 Leucine-rich Repeat extension Gene Families AT3G24480 63.5 3.5e-41 166.8
Cpe03g01458 CST 43 368 Leucine-rich Repeat extension Gene Families AT3G24480 63.6 5.6e-39 159.5
Cpe17g00367 . 28 231 Leucine-rich Repeat extension Gene Families AT3G24480 61.3 3.6e-38 156.8
Cpe08g00278 CST 36 369 Leucine-rich Repeat extension Gene Families AT3G24480 58.8 2.0e-36 151.0
Cpe04g00813 . 53 383 Leucine-rich Repeat extension Gene Families AT3G24480 56.6 2.6e-36 150.6
Cpe03g01458 CST 15 369 Leucine-rich Repeat extension Gene Families AT3G22800 64.3 8.5e-53 205.3
Cpe08g00278 CST 38 368 Leucine-rich Repeat extension Gene Families AT3G22800 66.0 2.7e-51 200.3
Cpe04g00813 . 50 382 Leucine-rich Repeat extension Gene Families AT3G22800 60.2 7.4e-41 165.6
Cpe04g01144 . 65 393 Leucine-rich Repeat extension Gene Families AT3G22800 62.2 5.3e-39 159.5
Cpe11g01106 CCT,CST 86 445 Leucine-rich Repeat extension Gene Families AT5G25550 63.0 7.6e-40 162.2
Cpe07g00999 CCT,CST 54 234 Leucine-rich Repeat extension Gene Families AT5G25550 73.5 2.2e-39 160.6
Cpe02g00154 . 61 401 Leucine-rich Repeat extension Gene Families AT5G25550 55.1 2.9e-39 160.2
Cpe04g01144 . 39 219 Leucine-rich Repeat extension Gene Families AT5G25550 71.8 3.8e-39 159.8
Cpe18g00446 CCT 47 413 Leucine-rich Repeat extension Gene Families AT5G25550 61.0 8.4e-39 158.7
Cpe08g00278 CST 36 368 Leucine-rich Repeat extension Gene Families AT5G25550 66.4 1.1e-38 158.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012968 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00813 Cpe_Chr04 FPKM 3.537238 4.941437 3.939426 4.519504 9.377151 9.958154 7.834084 8.279108 7.532203 7.735533