Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00813 ATGGCTTCGTTCCTGTTCTTGTCCTCCTCCTCCAAAGCTTTAATCTTGTTACTCCTTCAGTTATCTTGTCTGTTTAAGAGCTTGAGCGCCAAACATGGTGGCGTAGTCACTCATAATGACCATCACCACCACCACCGTGCTCGATCACCGAGCACGAACCCGAGACTCCACCAAGCATTCCTTGCTCTCCAAGCATGGAAAAAGGTCATTTACTCTGACCCAAAAAACCATACCACCAATTGGGTAGGGCCTTCAGTTTGCAGCTACTTTGGGGTATACTGTGCCCCATCTCTCAACGACTCAAATGTTCAGGTCGTCGCCGGAATCGACTTAAACCACGGGGACATTGCCGGATTCCTTCCTAATGAATTAGGCCTTTTAACAGACCTTGCTCTGCTCCATCTCAACAGCAACCGTTTCTGCGGCGTTTTGCCTCAATCTTTAGCCAATTTGTCTCTCCTCTTCGAATTAGATTTAAGCAACAACAGATTCGTTGGCCCTTTTCCTTCTGTTGTTCTTCATCTTCCAAACTTAACATATCTCGACCTTCGATTCAACGAATTTGAAGGCCAAATTCCCCCTGAACTCTTCAACAAAAGCCTCGACGCCATTTTTATAAACAGCAATCGTTTCACCAACATTATCCCTCGAAACATCGGTGGAAAATCAGCCTCCGTGATTGTCTTTGCCAACAACAATTTGAAGGGCTGTCTTCCACCGACGATTGCAAGTTTTGCAAACAGTTTAGAAGAACTTTTGTTGATCAACACGAGTTTATCAGGCTGTTTGCCGCAAGAAATTGGGTTCTTGTACAAATTGAAGGTTTTGGATGTGAGTTTTAATGAATTAGTGGGTCCTTTGCCGTATAGTTTAGCTGGGTTGGGTCAATTGGAGCAATTGAATTTGGCTCACAATTTGTTTACTGGGAATTTGTTTGAAGGGCTTTGTAACCTTCCGAATTTGGAGAATGTGACGGTTTCTTATAATTACTTTTGTGAGGAAGAAGGGGTTTGCCGGAATTTGACGGCGGAAGGGGTTGCTTTTGATGATCGTCGGAATTGTGTGCCGGAGAAGCCGCTGCAGAGGAGTAAGAAGGAGTGTAGTGCGGTGGTTGAGCGTCCTGTGGATTGTTTTGAGCATCCGTGTGGCGGTGGTTATGGTTCAAGTATTGCGGCGGTTCCGGCTTCGGCGCCTATTTCTTCAACTTCTTCCGTTGTTGCCCCTGCCCACTTGTGA 1236 45.79 MASFLFLSSSSKALILLLLQLSCLFKSLSAKHGGVVTHNDHHHHHRARSPSTNPRLHQAFLALQAWKKVIYSDPKNHTTNWVGPSVCSYFGVYCAPSLNDSNVQVVAGIDLNHGDIAGFLPNELGLLTDLALLHLNSNRFCGVLPQSLANLSLLFELDLSNNRFVGPFPSVVLHLPNLTYLDLRFNEFEGQIPPELFNKSLDAIFINSNRFTNIIPRNIGGKSASVIVFANNNLKGCLPPTIASFANSLEELLLINTSLSGCLPQEIGFLYKLKVLDVSFNELVGPLPYSLAGLGQLEQLNLAHNLFTGNLFEGLCNLPNLENVTVSYNYFCEEEGVCRNLTAEGVAFDDRRNCVPEKPLQRSKKECSAVVERPVDCFEHPCGGGYGSSIAAVPASAPISSTSSVVAPAHL 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7646840 7648075 + Cp4.1LG04g02840.1 Cpe04g00813 468375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00813 411 SMART LRR_typ_2 294 314 IPR003591 -
Cpe04g00813 411 SMART LRR_typ_2 127 150 IPR003591 -
Cpe04g00813 411 SMART LRR_typ_2 270 293 IPR003591 -
Cpe04g00813 411 SMART LRR_typ_2 175 199 IPR003591 -
Cpe04g00813 411 Pfam Leucine rich repeat N-terminal domain 59 94 IPR013210 -
Cpe04g00813 411 Gene3D Ribonuclease Inhibitor 226 346 IPR032675 -
Cpe04g00813 411 Gene3D Ribonuclease Inhibitor 59 225 IPR032675 -
Cpe04g00813 411 Pfam Leucine rich repeat 130 187 IPR001611 GO:0005515
Cpe04g00813 411 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1 406 - -
Cpe04g00813 411 PANTHER EXTENSIN-LIKE PROTEIN 1 406 - -
Cpe04g00813 411 SUPERFAMILY L domain-like 59 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00813 Cpe-Chr4:7646840 Cpe08g00278 Cpe-Chr8:1792592 4.20E-132 dispersed
Cpe04g00813 Cpe-Chr4:7646840 Cpe11g01106 Cpe-Chr11:9219685 2.91E-132 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00813 - - cmos:111437069 744.577