Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00827 ATGCCACTCGATCACCACTCCCAACACTTCGATCAAACACGCAGTTCCGTCGAAGCCGATGATGATTCCGACCATCTCCACCCTACTCGTTCCACGACGTCTGTCGTCAATGGAGCCGACTGCGAGAATGCCGGCGATGACCTTTTCGTCCCTCCCCTGAACTTCGCCGTCGTTGACAATGGCATTTTCCGCTCCGGCTTCCCCGACTCTTCCAACTTCTACTTCTTGCAGACCTTAGGCCTTCGTTCGATTATATGTCTTTGTCCTGAGCCATATCCTGAGGCGAGCATGGATTTTCTCAAGTCGAATGGAATTCGATTGTTTCAACTCGGGATTGAAGGTACTAAGGAGCCTTTTGTGAACATTCCAGACAACACAATTCGTGAAGCACTTAAAATTATTCTCGATGTGAGGAATCGCCCAGTTCTAATCCATTGCAAACGAGGGAAGCACCGAACTGGTTGTGTTGTGGGATGCTTTAGAAAGCTGCAGAAATGGTGCCTATCCTCAGTCTTTTATGAGTATCAGCGGTTTGCCGCTGCCAAGGCAAGAGTTTCAGATCAGAGGTTCATTGAACTATTCGATGTTTCTGGCTTGAAGTATCTGCCATCTTCATTTTCTTGTTCCAAAAGATAA 636 47.48 MPLDHHSQHFDQTRSSVEADDDSDHLHPTRSTTSVVNGADCENAGDDLFVPPLNFAVVDNGIFRSGFPDSSNFYFLQTLGLRSIICLCPEPYPEASMDFLKSNGIRLFQLGIEGTKEPFVNIPDNTIREALKIILDVRNRPVLIHCKRGKHRTGCVVGCFRKLQKWCLSSVFYEYQRFAAAKARVSDQRFIELFDVSGLKYLPSSFSCSKR 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7718030 7721247 - Cp4.1LG04g02530.1 Cpe04g00827 468389

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00827 211 ProSitePatterns Tyrosine specific protein phosphatases active site. 144 154 IPR016130 GO:0016311|GO:0016791
Cpe04g00827 211 PANTHER TYROSINE-PROTEIN PHOSPHATASE 18 116 - -
Cpe04g00827 211 PANTHER TYROSINE-PROTEIN PHOSPHATASE 117 210 - -
Cpe04g00827 211 PRINTS Plant and fungal dual specificity phosphatase signature 49 66 IPR020428 GO:0016791
Cpe04g00827 211 PRINTS Plant and fungal dual specificity phosphatase signature 86 99 IPR020428 GO:0016791
Cpe04g00827 211 PRINTS Plant and fungal dual specificity phosphatase signature 105 119 IPR020428 GO:0016791
Cpe04g00827 211 PRINTS Plant and fungal dual specificity phosphatase signature 122 136 IPR020428 GO:0016791
Cpe04g00827 211 PANTHER - 18 116 - -
Cpe04g00827 211 PANTHER - 117 210 - -
Cpe04g00827 211 MobiDBLite consensus disorder prediction 1 37 - -
Cpe04g00827 211 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 49 195 IPR029021 -
Cpe04g00827 211 CDD PFA-DSP_Siw14 48 195 - -
Cpe04g00827 211 Pfam Tyrosine phosphatase family 50 197 IPR004861 -
Cpe04g00827 211 Gene3D Protein tyrosine phosphatase superfamily 48 198 IPR029021 -
Cpe04g00827 211 MobiDBLite consensus disorder prediction 1 28 - -
Cpe04g00827 211 ProSiteProfiles Dual specificity protein phosphatase domain profile. 54 208 IPR020422 GO:0006470|GO:0008138
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00827 K18045 SIW14, OCA3; tyrosine-protein phosphatase SIW14 [EC:3.1.3.48] - csv:101209768 355.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00827 Cpe-Chr4:7718030 Cpe18g00256 Cpe-Chr18:4212289 6.58E-74 dispersed
Cpe15g00854 Cpe-Chr15:8351458 Cpe04g00827 Cpe-Chr4:7718030 1.33E-74 wgd
Cpe16g00749 Cpe-Chr16:7535164 Cpe04g00827 Cpe-Chr4:7718030 6.30E-100 wgd
Cpe04g00827 Cpe-Chr4:7718030 Cpe05g01529 Cpe-Chr5:10530069 1.31E-104 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe04g00296 CST 6 612 Protein tyrosine phosphatase (PTP) family AT3G50110 56.6 2.2e-181 632.9
Cpe19g00640 . 33 650 Protein tyrosine phosphatase (PTP) family AT3G50110 55.6 3.4e-174 609.0
Cpe15g00475 CST 42 388 Protein tyrosine phosphatase (PTP) family AT3G50110 65.0 9.1e-135 478.0
Cpe04g00171 CCT 1 411 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.9e-157 552.7
Cpe03g00496 CCT 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 64.0 1.4e-152 536.6
Cpe13g00776 . 1 848 Protein tyrosine phosphatase (PTP) family AT3G10550 66.2 0.0e+00 1121.7
Cpe13g00776 . 1 848 Protein tyrosine phosphatase (PTP) family AT5G04540 62.6 4.8e-309 1057.4
Cpe18g00562 . 1 1191 Protein tyrosine phosphatase (PTP) family AT5G58160 55.3 0.0e+00 1094.0
Cpe04g01248 . 1 1233 Protein tyrosine phosphatase (PTP) family AT5G58160 54.6 0.0e+00 1078.5
Cpe02g00327 CCT 1 1361 Protein tyrosine phosphatase (PTP) family AT5G58160 51.6 7.8e-295 1010.7
Cpe06g00297 CCT 15 1312 Protein tyrosine phosphatase (PTP) family AT5G58160 50.3 4.4e-290 995.0
Cpe06g00927 . 82 372 Protein tyrosine phosphatase (PTP) family AT1G71860 65.2 4.9e-111 398.3
Cpe18g00937 . 13 910 Protein tyrosine phosphatase (PTP) family AT5G23720 56.8 1.7e-278 956.1
Cpe17g00126 . 60 198 Protein tyrosine phosphatase (PTP) family AT3G06110 54.3 2.9e-40 162.2
Cpe15g00859 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 5.8e-71 264.2
Cpe01g01265 . 104 384 Protein tyrosine phosphatase (PTP) family AT3G52180 70.8 5.6e-116 414.5
Cpe09g00392 . 111 391 Protein tyrosine phosphatase (PTP) family AT3G52180 66.9 7.8e-110 394.0
Cpe01g00998 . 533 749 Protein tyrosine phosphatase (PTP) family AT3G10940 77.6 1.8e-103 372.9
Cpe04g00550 . 143 585 Protein tyrosine phosphatase (PTP) family AT3G01510 71.0 2.0e-197 685.6
Cpe05g01529 . 9 215 Protein tyrosine phosphatase (PTP) family AT2G32960 57.3 2.4e-73 272.7
Cpe04g00827 . 45 211 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 2.3e-68 256.1
Cpe16g00749 . 43 228 Protein tyrosine phosphatase (PTP) family AT2G32960 59.7 5.1e-68 255.0
Cpe08g00726 . 1 333 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 2.3e-100 362.8
Cpe14g00928 . 1 333 Protein tyrosine phosphatase (PTP) family AT2G35680 54.5 5.8e-96 348.2
Cpe07g01040 CST 17 195 Protein tyrosine phosphatase (PTP) family AT2G35680 72.1 2.1e-74 276.6
Cpe11g01148 CST 22 257 Protein tyrosine phosphatase (PTP) family AT2G35680 54.8 6.2e-74 275.0
Cpe11g01158 . 22 257 Protein tyrosine phosphatase (PTP) family AT2G35680 54.8 6.2e-74 275.0
Cpe14g00928 . 37 212 Protein tyrosine phosphatase (PTP) family AT5G56610 51.7 2.2e-44 176.0
Cpe07g01040 CST 27 198 Protein tyrosine phosphatase (PTP) family AT5G56610 52.9 4.1e-43 171.8
Cpe08g00726 . 37 209 Protein tyrosine phosphatase (PTP) family AT5G56610 50.3 4.1e-43 171.8
Cpe05g01529 . 49 215 Protein tyrosine phosphatase (PTP) family AT4G03960 76.0 6.7e-76 280.8
Cpe16g00749 . 40 229 Protein tyrosine phosphatase (PTP) family AT4G03960 68.4 9.0e-73 270.4
Cpe04g00827 . 42 211 Protein tyrosine phosphatase (PTP) family AT4G03960 72.4 5.9e-72 267.7
Cpe18g00256 . 15 170 Protein tyrosine phosphatase (PTP) family AT4G03960 59.6 1.5e-54 209.9
Cpe18g00256 . 1 196 Protein tyrosine phosphatase (PTP) family AT3G02800 68.4 3.6e-77 285.0
Cpe05g01529 . 43 209 Protein tyrosine phosphatase (PTP) family AT3G02800 62.3 3.2e-57 218.8
Cpe04g00827 . 40 200 Protein tyrosine phosphatase (PTP) family AT3G02800 56.5 3.7e-53 205.3
Cpe16g00749 . 37 219 Protein tyrosine phosphatase (PTP) family AT3G02800 54.6 9.0e-52 200.7
Cpe01g01110 CCT 11 196 Protein tyrosine phosphatase (PTP) family AT3G55270 65.8 1.3e-61 235.3
Cpe01g00201 CCT 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 63.0 3.8e-58 223.8
Cpe04g00171 CCT 1 411 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.9e-157 552.7
Cpe03g00496 CCT 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 64.0 1.4e-152 536.6
Cpe04g00296 CST 8 612 Protein tyrosine phosphatase (PTP) family AT3G19420 63.8 1.8e-220 762.7
Cpe19g00640 . 31 650 Protein tyrosine phosphatase (PTP) family AT3G19420 57.6 3.1e-188 655.6
Cpe15g00475 CST 40 389 Protein tyrosine phosphatase (PTP) family AT3G19420 73.3 1.6e-160 563.5
Cpe04g00296 CST 6 612 Protein tyrosine phosphatase (PTP) family AT3G50110 56.6 2.2e-181 632.9
Cpe19g00640 . 33 650 Protein tyrosine phosphatase (PTP) family AT3G50110 55.6 3.4e-174 609.0
Cpe15g00475 CST 42 388 Protein tyrosine phosphatase (PTP) family AT3G50110 65.0 9.1e-135 478.0
Cpe18g00562 . 1 1191 Protein tyrosine phosphatase (PTP) family AT5G58160 55.3 0.0e+00 1094.0
Cpe04g01248 . 1 1233 Protein tyrosine phosphatase (PTP) family AT5G58160 54.6 0.0e+00 1078.5
Cpe02g00327 CCT 1 1361 Protein tyrosine phosphatase (PTP) family AT5G58160 51.6 7.8e-295 1010.7
Cpe06g00297 CCT 15 1312 Protein tyrosine phosphatase (PTP) family AT5G58160 50.3 4.4e-290 995.0
Cpe13g00776 . 1 848 Protein tyrosine phosphatase (PTP) family AT3G10550 66.2 0.0e+00 1121.7
Cpe13g00776 . 1 848 Protein tyrosine phosphatase (PTP) family AT5G04540 62.6 4.8e-309 1057.4
Cpe14g00952 . 20 339 Protein tyrosine phosphatase (PTP) family AT2G35320 60.0 1.4e-109 393.3
Cpe10g00935 CCT 1 638 Protein tyrosine phosphatase (PTP) family AT3G09100 64.7 1.5e-249 859.4
Cpe19g00296 CCT 24 625 Protein tyrosine phosphatase (PTP) family AT3G09100 66.7 6.1e-246 847.4
Cpe19g00296 CCT 24 625 Protein tyrosine phosphatase (PTP) family AT5G01290 63.8 8.3e-232 800.4
Cpe10g00935 CCT 1 638 Protein tyrosine phosphatase (PTP) family AT5G01290 62.2 2.7e-230 795.4
Cpe19g00296 CCT 66 625 Protein tyrosine phosphatase (PTP) family AT5G28210 54.6 3.2e-172 602.4
Cpe10g00935 CCT 82 638 Protein tyrosine phosphatase (PTP) family AT5G28210 54.4 8.6e-170 594.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001007 2 3 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 4 4 1 2 2 2 2 2 2 2 7 6 2 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00827 Cpe_Chr04 FPKM 25.937038 29.417532 17.273851 18.454397 13.264723 9.089141 13.449672 20.982628 20.633245 21.973537