Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00827 ATGCCACTCGATCACCACTCCCAACACTTCGATCAAACACGCAGTTCCGTCGAAGCCGATGATGATTCCGACCATCTCCACCCTACTCGTTCCACGACGTCTGTCGTCAATGGAGCCGACTGCGAGAATGCCGGCGATGACCTTTTCGTCCCTCCCCTGAACTTCGCCGTCGTTGACAATGGCATTTTCCGCTCCGGCTTCCCCGACTCTTCCAACTTCTACTTCTTGCAGACCTTAGGCCTTCGTTCGATTATATGTCTTTGTCCTGAGCCATATCCTGAGGCGAGCATGGATTTTCTCAAGTCGAATGGAATTCGATTGTTTCAACTCGGGATTGAAGGTACTAAGGAGCCTTTTGTGAACATTCCAGACAACACAATTCGTGAAGCACTTAAAATTATTCTCGATGTGAGGAATCGCCCAGTTCTAATCCATTGCAAACGAGGGAAGCACCGAACTGGTTGTGTTGTGGGATGCTTTAGAAAGCTGCAGAAATGGTGCCTATCCTCAGTCTTTTATGAGTATCAGCGGTTTGCCGCTGCCAAGGCAAGAGTTTCAGATCAGAGGTTCATTGAACTATTCGATGTTTCTGGCTTGAAGTATCTGCCATCTTCATTTTCTTGTTCCAAAAGATAA 636 47.48 MPLDHHSQHFDQTRSSVEADDDSDHLHPTRSTTSVVNGADCENAGDDLFVPPLNFAVVDNGIFRSGFPDSSNFYFLQTLGLRSIICLCPEPYPEASMDFLKSNGIRLFQLGIEGTKEPFVNIPDNTIREALKIILDVRNRPVLIHCKRGKHRTGCVVGCFRKLQKWCLSSVFYEYQRFAAAKARVSDQRFIELFDVSGLKYLPSSFSCSKR 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7718030 7721247 - Cp4.1LG04g02530.1 Cpe04g00827 468389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00827 211 ProSitePatterns Tyrosine specific protein phosphatases active site. 144 154 IPR016130 GO:0016311|GO:0016791
Cpe04g00827 211 PANTHER TYROSINE-PROTEIN PHOSPHATASE 18 116 - -
Cpe04g00827 211 PANTHER TYROSINE-PROTEIN PHOSPHATASE 117 210 - -
Cpe04g00827 211 PRINTS Plant and fungal dual specificity phosphatase signature 49 66 IPR020428 GO:0016791
Cpe04g00827 211 PRINTS Plant and fungal dual specificity phosphatase signature 86 99 IPR020428 GO:0016791
Cpe04g00827 211 PRINTS Plant and fungal dual specificity phosphatase signature 105 119 IPR020428 GO:0016791
Cpe04g00827 211 PRINTS Plant and fungal dual specificity phosphatase signature 122 136 IPR020428 GO:0016791
Cpe04g00827 211 PANTHER - 18 116 - -
Cpe04g00827 211 PANTHER - 117 210 - -
Cpe04g00827 211 MobiDBLite consensus disorder prediction 1 37 - -
Cpe04g00827 211 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 49 195 IPR029021 -
Cpe04g00827 211 CDD PFA-DSP_Siw14 48 195 - -
Cpe04g00827 211 Pfam Tyrosine phosphatase family 50 197 IPR004861 -
Cpe04g00827 211 Gene3D Protein tyrosine phosphatase superfamily 48 198 IPR029021 -
Cpe04g00827 211 MobiDBLite consensus disorder prediction 1 28 - -
Cpe04g00827 211 ProSiteProfiles Dual specificity protein phosphatase domain profile. 54 208 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00827 Cpe-Chr4:7718030 Cpe18g00256 Cpe-Chr18:4212289 6.58E-74 dispersed
Cpe15g00854 Cpe-Chr15:8351458 Cpe04g00827 Cpe-Chr4:7718030 1.33E-74 wgd
Cpe16g00749 Cpe-Chr16:7535164 Cpe04g00827 Cpe-Chr4:7718030 6.30E-100 wgd
Cpe04g00827 Cpe-Chr4:7718030 Cpe05g01529 Cpe-Chr5:10530069 1.31E-104 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00827 K18045 - csv:101209768 355.91