Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00849 TACAACAGCGTGTGGAGGCCGTTGGACGTGTCCTGCTCTTCATCGGAACTCATTTCTCCGGTGGACGACATGTCCAAAAAGAAGGCTTCAAATGCTTCAGTGTCGTCTTCATCTGATGAGGCTGCACCTGCAGCCGAAGACGATTCCGTGAAGAGCAAGAAAGAAGAGAAGCGTAAGAAACAAGAAACAAAAGGTGGGTTTTTTAGAACAAGATCGATTATGTTGAGATTTATCAGGAACGCAGCCCAAAAGAAAGAGAAGCGAGAGAGGGAGCCCCGGTTTGCTTTCTTGACTAAGAGTGAGATTGATCAGCTTGAAGATGGATATAGGTGGAGAAAATATGGACAGAAGGCAGTCAAAAACAGTCCTTACCCCAGAAGTTACTACAGATGCACCAGTCAAAAATGCGTAGTGAAGAAACGAGTAGAAAGATCATACCAAGATCCATCCCTGGTCATAACTACGTATGAAGGCCAACACATCCACCATTGCCCGGCTACACTCCGAGGCCATTCGTCTCCGTTTTACGCATCGGCATCGACATCGACATTGGCAACGGCACCCTCCTCGGGGCCTGCCCTTCCCCAAGAACTCTTCTCGCATTTGCTATCAAAGAACTGCCAGACCGATCCCACGTCAATGGTGTACCAAAATCCAAATCTCCAGCAACATCTTCAAATGTCGGATCATCATAGTCTGTTGCAGGATTTGTTCACTCAAAAATAG 726 46.97 YNSVWRPLDVSCSSSELISPVDDMSKKKASNASVSSSSDEAAPAAEDDSVKSKKEEKRKKQETKGGFFRTRSIMLRFIRNAAQKKEKREREPRFAFLTKSEIDQLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCVVKKRVERSYQDPSLVITTYEGQHIHHCPATLRGHSSPFYASASTSTLATAPSSGPALPQELFSHLLSKNCQTDPTSMVYQNPNLQQHLQMSDHHSLLQDLFTQK 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7845052 7845905 + Cp4.1LG04g02450.1 Cpe04g00849 468411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00849 241 MobiDBLite consensus disorder prediction 1 63 - -
Cpe04g00849 241 Gene3D WRKY domain 89 166 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe04g00849 241 MobiDBLite consensus disorder prediction 1 42 - -
Cpe04g00849 241 SUPERFAMILY WRKY DNA-binding domain 98 165 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe04g00849 241 PANTHER WRKY TRANSCRIPTION FACTOR 71-RELATED 2 239 - -
Cpe04g00849 241 SMART WRKY_cls 105 164 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe04g00849 241 ProSiteProfiles WRKY domain profile. 100 165 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe04g00849 241 Pfam WRKY DNA -binding domain 106 162 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe04g00849 241 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 2 239 IPR044810 GO:0003700
Cpe04g00849 241 MobiDBLite consensus disorder prediction 44 63 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00849 Cpe-Chr4:7845052 Cpe10g00103 Cpe-Chr10:689343 2.18E-50 dispersed
Cpe10g00893 Cpe-Chr10:5028958 Cpe04g00849 Cpe-Chr4:7845052 1.71E-22 dispersed
Cpe15g00881 Cpe-Chr15:8508582 Cpe04g00849 Cpe-Chr4:7845052 1.06E-97 wgd
Cpe16g00728 Cpe-Chr16:7390912 Cpe04g00849 Cpe-Chr4:7845052 1.82E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49379 PF03106 WRKY 1.10E-24 CL0274 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00849 - - cmos:111437082 375.17