Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00855 ATGGATTCGACTCCACAAGTTTGCGAGGGCGAGGATGAGATCCCGCTTCCCGGATTCCGATTCCATCCGACGGACGAAGAGCTGGTGAGCTTTTACCTTCGTGGGAAAGTTGAGAAGAGAGGCATCAGGCTTGGACTCATCAAACAGATGGATATTTACAAACACAACCCCTGGGAGCTTCCGTATGGGAGCAGCAACGTGGGAGATAAAGAGTGGTACTTTTACTGCAAGAGAGGGAGGAAGTACAAGAACAGTATCAGGCCAAATAGAGTAACTGGGTCCGGGTTTTGGAAGGCCACTGGCATAGACAAGCCCGTGTATTCCAACGGAGGGGAGGGCAGTGAGTGCATTGGCCTCAAGAAGACGCTCGTTTACTATCGTGGAAGTGCTGGAAAAGGCACCAAAACTTATTGGATGATGCACGAGTTTCGCCTCCCACCTTCCAATTCCTATAACGTTGCTCAAGAAGCGGAAATCTGGACGCTGTGCCGGATCTTCAAGAGGAATATGAGTTGCAGAAGGTATGGATCCAATTGGAACAAACAAACACCCACCAAAAACCCCTTGACTGATCAGAAGAACACGAAGCCGTGCAATGAGCAGGTCATGGGCAGTGGAGAAGTCAGTTATAACAATTGGAGCTGCGACTCCATGATCATCCAGAATGAGCAGAAGGCGGTTGTTCCTAGTGACCCAAATAATCGTGAATGGATGAATAGGAATTATCAATATTACAGCAGCAGCTCCTCCATGGCCCCATCTCCAGTTTCCAGTGGTATTATTTCAGCTCCAATAGCCTTCCCCACAAATGAGCAGCTGGATGTGAATGATTTCTTCACAAATAGCAACTGGGATGAGCTGAGATCAGTGGTGGACATGTTGTAG 885 48.36 MDSTPQVCEGEDEIPLPGFRFHPTDEELVSFYLRGKVEKRGIRLGLIKQMDIYKHNPWELPYGSSNVGDKEWYFYCKRGRKYKNSIRPNRVTGSGFWKATGIDKPVYSNGGEGSECIGLKKTLVYYRGSAGKGTKTYWMMHEFRLPPSNSYNVAQEAEIWTLCRIFKRNMSCRRYGSNWNKQTPTKNPLTDQKNTKPCNEQVMGSGEVSYNNWSCDSMIIQNEQKAVVPSDPNNREWMNRNYQYYSSSSSMAPSPVSSGIISAPIAFPTNEQLDVNDFFTNSNWDELRSVVDML 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7883661 7885146 - Cp4.1LG04g02190.1 Cpe04g00855 468417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00855 294 SUPERFAMILY NAC domain 16 168 IPR036093 GO:0003677|GO:0006355
Cpe04g00855 294 Pfam No apical meristem (NAM) protein 17 145 IPR003441 GO:0003677|GO:0006355
Cpe04g00855 294 ProSiteProfiles NAC domain profile. 15 168 IPR003441 GO:0003677|GO:0006355
Cpe04g00855 294 Gene3D NAC domain 24 172 IPR036093 GO:0003677|GO:0006355
Cpe04g00855 294 PANTHER CONTAINING PROTEIN 9, PUTATIVE, EXPRESSED-RELATED 9 293 - -
Cpe04g00855 294 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 293 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00855 Cpe16g00719 CCT
Cpe04g00855 Cpe15g00886 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00855 Cpe-Chr4:7883661 Cpe05g01561 Cpe-Chr5:10733902 1.32E-34 dispersed
Cpe02g00615 Cpe-Chr2:3731600 Cpe04g00855 Cpe-Chr4:7883661 1.94E-81 transposed
Cpe15g00886 Cpe-Chr15:8560357 Cpe04g00855 Cpe-Chr4:7883661 3.41E-124 wgd
Cpe16g00719 Cpe-Chr16:7324114 Cpe04g00855 Cpe-Chr4:7883661 8.24E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49380 PF02365 NAM 1.60E-33 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00855 - - cmos:111437040 587.03